PAL2NAL output

CLUSTAL W multiple sequence alignment

P00452.2       ATGAATCAGAATCTGCTGGTGACAAAGCGCGACGGTAGCACAGAGCGCATCAATCTCGAC
NP_230901.1    ATGAACCAACAACTTACTGTCACCAAGCGTGATGGCCGCAAAGAAAACATTGATCTGGAT

P00452.2       AAAATCCATCGCGTTCTGGATTGGGCGGCAGAAGGACTGCATAACGTTTCGATTTCCCAG
NP_230901.1    AAGATCCACCGAGTGATCACTTGGGCTGCCGAAGGTCTGCAAAACGTATCTGTCTCACAA

P00452.2       GTCGAGCTGCGCTCCCACATTCAGTTTTATGACGGTATCAAGACCTCTGACATCCACGAA
NP_230901.1    GTAGAACTGCGCGCTCACATTCAGTTCTATGACGGCATTACGACTTCAGACATTCATGAA

P00452.2       ACCATTATCAAGGCTGCCGCAGACCTGATCTCCCGTGATGCGCCGGATTATCAGTATCTC
NP_230901.1    ACCATCATTAAGTCAGCAGCGGATTTGATCTCAGAAGAGACCCCCGACTACCAATACCTT

P00452.2       GCCGCGCGCCTGGCGATCTTCCACCTGCGTAAAAAAGCCTACGGCCAGTTTGAGCCGCCT
NP_230901.1    GCTGCGCGTCTTGCGGTTTTCCACCTGCGCAAAAAGGCCTACGGTCAATACGAGCCACCT

P00452.2       GCGCTGTACGACCACGTGGTGAAAATGGTCGAGATGGGCAAATACGATAATCATCTGCTG
NP_230901.1    ACACTGCTCGCTCATGTCACCAAGATGGTTGAGAAAGGCAAATACGACAAGCATTTGCTC

P00452.2       GAAGACTACACGGAAGAAGAGTTCAAGCAGATGGACACCTTTATCGATCACGACCGTGAT
NP_230901.1    GAAGACTATACCCGTGAAGAGCTGGAGCTGATGGATCAGTTCATTGATCACCGTCGTGAC

P00452.2       ATGACCTTCTCTTATGCTGCCGTTAAGCAGCTGGAAGGCAAATATCTGGTACAGAACCGC
NP_230901.1    CTTGATTTCTCTTACGCTGCAGTGAAACAGCTTGAAGGCAAATATTTCGTACAAAACCGT

P00452.2       GTGACCGGCGAAATCTATGAGAGCGCCCAGTTCCTTTATATTCTAGTTGCCGCGTGCTTG
NP_230901.1    GTTACCGGCCAAATCTACGAAAGTGCACAGTTCCTCTATATTCTGGTTGCGGCTTGCCTG

P00452.2       TTCTCGAACTACCCGCGTGAAACGCGCCTGCAATATGTGAAGCGTTTTTACGACGCGGTT
NP_230901.1    TTTGCGAAGTATCCCAAAGAGACGCGCCTTGATTACATCAAGCGTTTCTACGATGCGACG

P00452.2       TCCACATTTAAAATTTCGCTGCCGACGCCAATCATGTCCGGCGTGCGTACCCCGACTCGT
NP_230901.1    TCGACCTTTAAGATCTCGCTACCTACACCGATTATGTCGGGTGTACGTACTCCTACTCGT

P00452.2       CAGTTCAGCTCCTGCGTACTGATCGAGTGCGGTGACAGCCTGGATTCCATCAACGCCACC
NP_230901.1    CAGTTCAGCTCTTGTGTACTGATTGAATGTGGTGACAGCCTTGATTCTATCAATGCAACG

P00452.2       TCCAGCGCGATTGTTAAATACGTTTCCCAGCGTGCCGGGATCGGCATCAACGCCGGGCGT
NP_230901.1    GCAAGCTCGATTGTTCGCTACGTTTCTCAACGTGCCGGTATTGGTATCAACGCAGGCCGC

P00452.2       ATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCGTTCCATACCGGCTGCATTCCG
NP_230901.1    ATTCGTGCGCTGGGTTCGGAAATCCGTGGTGGTGAAGCGTTCCACACTGGCTGTATCCCC

P00452.2       TTCTACAAACATTTCCAGACAGCGGTGAAATCCTGCTCTCAGGGCGGTGTGCGCGGCGGT
NP_230901.1    TTCTACAAATACTTCCAAACCGCAGTGAAATGCTGCTCGCAAGGTGGTGTTCGTGGTGGT

P00452.2       GCGGCAACGCTGTTCTACCCGATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGTTGAAA
NP_230901.1    GCAGCAACCGTATTCTACCCTCTGTGGCATGGTGAAGCGGAATCTCTGCTGGTTCTGAAG

P00452.2       AACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGGTACAAATCAAC
NP_230901.1    AACAACCGTGGTGTAGAAGAGAACCGTGTTCGTCATATGGATTACGGTGTTCAGCTCAAC

P00452.2       AAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGTTCAGCCCGTCCGAC
NP_230901.1    AAACTGATGTACAAGCGTCTGGTTGAAGGTGGCAACATTACCCTGTTCTCTCCTTCTGAT

P00452.2       GTACCGGGGCTGTACGACGCGTTCTTCGCCGATCAGGAAGAGTTTGAACGTCTGTATACC
NP_230901.1    GTGCCGGGACTGTACGACGCTTTCTTCCAAGATCAGGATGAGTTCGAACGCCTGTACGTG

P00452.2       AAATATGAGAAAGACGACAGCATCCGCAAGCAGCGTGTGAAAGCCGTTGAGCTGTTCTCG
NP_230901.1    AAGTACGAAAACGATCCTTCAATTAAGAAGAAAACCGTTAAAGCGCTGGAAATCTTTACT

P00452.2       CTGATGATGCAGGAACGTGCGTCTACCGGTCGTATCTATATTCAGAACGTTGACCACTGC
NP_230901.1    CTGCTGATGCAAGAGCGTGCTTCAACAGGCCGTATCTACATCCAAAACGTTGACCACTGT

P00452.2       AATACCCATAGCCCGTTTGATCCGGCCATCGCGCCAGTGCGTCAGTCTAACCTGTGCCTG
NP_230901.1    AACACGCACAGCCCATTTGATGCGGCGGTTGCACCTGTGCGTCAATCAAACCTGTGTCTG

P00452.2       GAGATAGCCCTGCCGACCAAACCGCTGAACGACGTCAACGACGAGAACGGTGAAATCGCG
NP_230901.1    GAAATCGCGCTACCGACTTCGCCACTGGCGAATGTGGAAGATGAAAGCGGTGAAATTGCT

P00452.2       CTGTGTACGCTGTCTGCTTTCAACCTGGGCGCAATTAATAACCTGGATGAACTGGAAGAG
NP_230901.1    CTGTGTACCCTCTCTGCGTTTAACTTAGGCGCGATTGAGTCACTGGATGATTTTGAAGAG

P00452.2       CTGGCAATTCTGGCGGTTCGTGCACTTGACGCGCTGCTGGATTATCAGGATTACCCGATC
NP_230901.1    CTGTCTGACCTTGTGGTTCGTGCTCTAGATGCATTATTGGATTACCAAGACTACCCACTG

P00452.2       CCGGCCGCCAAACGTGGAGCGATGGGTCGTCGTACGCTGGGTATTGGTGTGATCAACTTC
NP_230901.1    CCTGCGGCACGTCGTTCTTCAATGAACCGCCGTACTCTGGGTGTGGGTGTGATCAACTAC

P00452.2       GCTTACTACCTGGCGAAGCACGGTAAACGCTACTCCGACGGCAGCGCCAACAACCTGACG
NP_230901.1    GCTTACTACCTAGCGAAAAACGGTGTGAAATACTCTGACGGCAGCGCAAATGGCCTGACG

P00452.2       CATAAAACCTTCGAAGCCATTCAGTATTACCTGCTGAAAGCCTCTAATGAGCTGGCGAAA
NP_230901.1    CACCGCACGTTTGAAGCCATGCAGTATCACTTGCTGCGCGCTTCTATGAAGCTGGCGAAA

P00452.2       GAGCAAGGCGCGTGCCCGTGGTTTAACGAAACCACTTACGCGAAAGGGATCCTGCCGATC
NP_230901.1    GAACAAGGTCGTTGCCCACTGTTCCATGAGACCAACTACGCGAAAGGCTTGATGCCAATC

P00452.2       GATACCTATAAGAAAGATCTGGATACCATCGCTAATGAGCCGCTGCATTACGACTGGGAA
NP_230901.1    GATACTTATAAGAAAGATATCGATCTGGTGTGTGCAGAGCCTCTGCATTACGACTGGGAT

P00452.2       GCTCTGCGTGAGTCAATCAAAACGCACGGTCTGCGTAACTCCACGCTTTCTGCTCTGATG
NP_230901.1    AAGCTGCGTCACGAGATCATGGAACACGGTCTGCGTAACTCTACGCTGACGGCACTGATG

P00452.2       CCGTCCGAGACTTCTTCGCAGATCTCTAACGCCACTAACGGTATTGAACCGCCGCGCGGT
NP_230901.1    CCTTCTGAGACTTCATCGCAAATCTCTAACGCGACCAACGGTATTGAGCCACCACGTGGT

P00452.2       TACGTCAGCATCAAAGCGTCGAAAGACGGTATTTTGCGCCAGGTGGTGCCGGACTACGAG
NP_230901.1    TACGTCTCGGTCAAAGCCTCAAAAGACGGTATCTTGAAACAAGTGGTTCCAGAATTCACT

P00452.2       CACCTGCACGACGCCTATGAGCTGCTGTGGGAAATGCCGGGTAACGATGGTTATCTGCAA
NP_230901.1    CGCTTAAAAGAGAACTATGAACTGCTGTGGAACATCGGCTCAAACGATGGCTATCTGCAC

P00452.2       CTGGTGGGTATCATGCAGAAATTTATCGATCAGTCGATCTCTGCCAACACCAACTACGAT
NP_230901.1    TTAGTGGGTATCATGCAAAAGTTCGTTGACCAAGCGATCTCTGCCAATACTAACTACGAT

P00452.2       CCGTCACGCTTCCCGTCAGGAAAAGTGCCGATGCAGCAGTTGCTGAAAGACCTGCTCACC
NP_230901.1    CCAAGCAATTTCGATTCTGGCAAAGTACCGATGAAAAAACTGCTCCAAGATCTGCTGACA

P00452.2       GCCTACAAATTCGGGGTCAAAACACTGTATTATCAGAACACCCGTGACGGCGCTGAAGAC
NP_230901.1    GCGTATAAGTTTGGTGTGAAAACCTTGTACTACCATAACACTCGTGATGGCGCGAAAGAC

P00452.2       GCACAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAG
NP_230901.1    GAGCAGACCGATGCTACGGTGAAAGTGCAGGAAGACGATTGTGCCAGCGGCGCTTGTAAG

P00452.2       ATC
NP_230901.1    ATC



Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package:
KS = 2.3246
KA = 0.1410
KA/KS = 0.0607
Вернуться к протоколу занятия 1.