Header
Program needle
Rundate Mon Mar 26 2007 19:25:53
Align format srspair
Report file temp_job1.needlep
Results
 
#=======================================
#
# Aligned_sequences: 2
# 1: SYMM_HUMAN
# 2: SYM_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity:     107/404 (26.5%)
# Similarity:   167/404 (41.3%)
# Gaps:          50/404 (12.4%)
# Score: 390.0
# 
#
#=======================================

SYMM_HUMAN         1 -AYFTTPIFYVNAAPHIGHLYSALLADALCRHRRLRGPSTAATRFSTGTD     49
                      ...|..:.|.|.:.|:||:...:.||...|::|:||..   ..|....|
SYM_ECOLI          1 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE---VNFICADD     47

SYMM_HUMAN        50 EHGLKIQQAAATAGLAPTELCDRVSEQFQQLFQEAGISCTDFIRTTEARH     99
                     .||..|...|...|:.|.::...:|::.|..|....||..::..|....:
SYM_ECOLI         48 AHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEEN     97

SYMM_HUMAN       100 RVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEAKV------TQQPG    143
                     |...:..:..||..|.:........|......|||:..|      .:.|.
SYM_ECOLI         98 RQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPD    147

SYMM_HUMAN       144 PSGDSF--------------PVSLESGHPVSWTKEENYIFRLSQFRKPLQ    179
                     ..||:.              |.|:.||........|::.|.|..|.:.||
SYM_ECOLI        148 QYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQ    197

SYMM_HUMAN       180 RWLRGNPQAITPEPFHHVVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDS    229
                     .|.|   .....|...:.:.:|.:..|....:||.:.  ::|..:|....
SYM_ECOLI        198 AWTR---SGALQEQVANKMQEWFESGLQQWDISRDAP--YFGFEIPNAPG    242

SYMM_HUMAN       230 QTIYVWLDALVNYLTVIGYPN--------AEFKSWWPATS-----HIIGK    266
                     :..||||||.:.|:.  .:.|        ..|..:|...|     |.|||
SYM_ECOLI        243 KYFYVWLDAPIGYMG--SFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK    290

SYMM_HUMAN       267 DILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT    316
                     ||:.||:::|||.|.|:....|..:.||.:.||.|.|||||.|..:...|
SYM_ECOLI        291 DIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKAST    340

SYMM_HUMAN       317 CLNRYTVDGFRYFL---LRQGVPNWDCDYYDEKVVKLLNSELADALGGLL    363
                     .||.:..|..||:.   |...:.  |.|...|..|:.:|:::.:.:..|.
SYM_ECOLI        341 WLNHFDADSLRYYYTAKLSSRID--DIDLNLEDFVQRVNADIVNKVVNLA    388

SYMM_HUMAN       364 NRCT    367
                     :|. 
SYM_ECOLI        389 SRN-    391


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