# This is a Rasmol script to demonstrate glutaminyl-tRNA structure. # In order to automatically load PDB file you may insert the following line # load pdb1qrt.ent define helix1 2-7B, 66-71B define helix2 10-12B, 23-25B define helix3 26-33B, 37-44B define helix4 49-54B, 58-65B define helixes helix1,helix2,helix3,helix4 echo tRNA helices are defined as echo helix1 - acceptor stem echo helix2 - D-stem echo helix3 - anticodon stem echo helix4 - T-stem echo helixes - all of them! define loop1 45-48B define loop2 13-22B define loop3 34-36B define loop4 55-57B define loops loop1,loop2, loop3,loop4 echo tRNA loops are defined as echo loop1 - V-loop echo loop2 - D-loop echo loop3 - anticodon stem echo loop4 - T-stem echo loops - all of them! define knot1 26B, 44B define knot2 32B, 38B define knots knot1,knot2 echo Not canon base pairs are defined as echo knot1 A-C echo knot2 U-U define lend1 75B define lend2 1B define lends lend1,lend2 echo Unpaired 3'-end:lend1 and 5'-end:lend2 define anticodon 34-36B echo Concur with anticodon loop! center 26B zoom 8000 restrict rna color white backbone 80 pause select helix1 color red echo This is the red acceptor stem! pause select helix2 color green echo This is the green D-stem! pause select helix3 color cyan echo This is the cyan anticodon stem! pause select helix4 color yellow echo This is the yellow T-stem! pause select knots and not phosphorus color blue echo Not canon base-pairs are blue. pause select anticodon color purple echo Anticodon is purple!
© Карпусь Ольга, 2005