Экспериментально установленные сайты связывания белка PurR из Escherichia coli
>codB
aaaaaatatatttccccacgaaaacgattgctttttatcttcagatgaatagaatgcggcggattttttgggtttcaaacagcaa
>purE
tgatttcacagccacgcaaccgttttccttgctctctttccgtgctattctctgtgccctctaaagccgagagttgtgcaccaca
>pyrC
agggcgcattcgcgccctttatttttcgtgcaaaggaaaacgtttccgcttatcctttgtgtccggcaaaaacatcccttcagcc
>purR
ggcgtaccgcaacacttttgttgtgcgtaaggtgtgtaaaggcaaacgtttaccttgcgattttgcaggagctgaagttagggtc
>cvpA
tttattgatgcgcgggaaggaaatccctacgcaaacgttttctttttctgttagaatgcgccccgaacaggatgacagggcgtaa
>purM
aaaggttgtgtaaagcagtctcgcaaacgtttgctttccctgttagaattgcgccgaattttatttttctaccgcaagtaacgcg
>guaB
gatagcaagcattttttgcaaaaaggggtagatgcaatcggttacgctctgtataatgccgcggcaatatttattaaccactctg
>glnB
ttcccgacacgagctggatgcaaacgatttcaaggaatgaattggcgttatgtgttacgtttagcagatcaaaagacaggcgacc
>purL
ttatttccacgcaaacggtttcgtcagcgcatcagattctttataatgacgcccgtttcccccccttgggtacaccgaaagctta
>purA
aggtcatttttgagtgcaaaaagtgctgtaactctgaaaaagcgatggtagaatccatttttaagcaaacggtgattttgaaaaa
Выданный мне вариант последовательности ДНК E.coli, находящейся перед генами, регулируемыми белком PurR с выделенными мотивами,
которые были найденны программой MEME.
>codB
catgctcagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgtttttacaccgataatttttcccccacctttttgcactcattcatat
aaaaaatatatttccccacgaaaacgattgctttttatcttcagatgaatagaatgcggcggattttttgggtttcaaacagcaaaaagggggaatttcg
>purE<
tggtactgggtgcctggcatacggaaggttcaatggtgaaagtcacggcggatgacgttgagctgattcattttccgttttaaaaaacccgcaactttgctg
atttcacagccacgcaaccgttttccttgctctctttccgtgctattctctgtgccctctaaagccgagagttgtgcaccacaggagttttaagacgc
>pyrC
gcgaagatggcagccagggcgaagcaatggcgaaaaaactggcgaaaggcattgaagtgaagccaggcgaaattgtcattccatttactgattaatcacgaggg
cgcattcgcgccctttatttttcgtgcaaaggaaaacgtttccgcttatcctttgtgtccggcaaaaacatcccttcagccggagcatagagatta
>purR
ttaccacttccccttttcgtcaagatcggccaaaattccacgcttacactatttgcgtactggccattgaccccttcctgacgctccgtgtcgtttttccg
gcgtaccgcaacacttttgttgtgcgtaaggtgtgtaaaggcaaacgtttaccttgcgattttgcaggagctgaagttagggtctggagtgaaatggaa
>cvpA
cgtaggtcggataaggcgtttacgccgcatccgacacgcattgcccgatgccgcaaaggcataaaaagtcgatggcgttgaatattttttcagcgccatttt
tattgatgcgcgggaaggaaatccctacgcaaacgttttctttttctgttagaatgcgccccgaacaggatgacagggcgtaaaatcgtgggacacat
>purM
atattcagatggttatgaaagaagattattccatccgaaaactaacctttaccctggcacaagtcttctttcgccgcgcgcctggggaaaagacgtgcaaaaag
gttgtgtaaagcagtctcgcaaacgtttgctttccctgttagaattgcgccgaattttatttttctaccgcaagtaacgcgtggggacccaagcag
>guaB
actaacggtaaaaattgcaggggattgagaaggtaacatgtgagcgagatcaaattctaaatcagcaggttattcagtcgatagtaacccgcccttcggggata
gcaagcattttttgcaaaaaggggtagatgcaatcggttacgctctgtataatgccgcggcaatatttattaaccactctggtcgagatattgccc
>glnB
aactcaactatttgcgtaagctgctgcaaatcaccaaaggcaacgtcacccacgcggcgagaatggcggggcgcaaccggacagaattttataaactgctttc
ccgacacgagctggatgcaaacgatttcaaggaatgaattggcgttatgtgttacgtttagcagatcaaaagacaggcgaccttttcaaggaatagc
>purL
aggtttactcataaatgagcggcattttgcgtaaacctgcgccagatggcaacttattacagccattggcggcacgcgttgctaattcacgatggtgattttat
ttccacgcaaacggtttcgtcagcgcatcagattctttataatgacgcccgtttcccccccttgggtacaccgaaagcttagaagacgagagactt
>purA
accaatttgcccgataatattttacgtcgttttggcggtggacttgtggttgcgggcgttgtggtctactacatgttgaggaaaacgattggctgaac
aaaaaacagactgatcgaggtcatttttgagtgcaaaaagtgctgtaactctgaaaaagcgatggtagaatccatttttaagcaaacggtgattttgaaaaa
>carA
tgtcgcttaatgcctgtaaaacatgcatgagccacaaaataatataaaaaatcccgccattaagttgacttttagcgcccatatctccagaatgccgccgtttgccag
aaattcgtcggtaagcagatttgcattgatttacgtcatcattgtgaattaatatgcaaataaagtgagtgaatattctctggagggtgttt