TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= METK_ECOLI P0A817 S-adenosylmethionine synthetase (EC 2.5.1.6)
(Methionine adenosyltransferase) (AdoMet synthetase) (MAT).
         (384 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006143|AE006143 Pasteurella multocida subsp. multocida st...   655   0.0  

>embl|AE006143|AE006143 Pasteurella multocida subsp. multocida str.
            Pm70 section 110 of 204 of the complete genome.
          Length = 10578

 Score =  655 bits (1691), Expect = 0.0
 Identities = 320/384 (83%), Positives = 351/384 (91%)
 Frame = -1

Query: 1    MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS 60
            M+++LFTSESVSEGHPDKIADQISDAVLD IL+QDPKARVACETYVKTGM LVGGEITTS
Sbjct: 7455 MSRYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTS 7276

Query: 61   AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ 120
            AWVDIE +TR  + +IGY HSDMGFD +SCAVL+AIGKQS DINQGVDR +PL+QGAGDQ
Sbjct: 7275 AWVDIENLTRQVICDIGYKHSDMGFDGHSCAVLNAIGKQSSDINQGVDRENPLDQGAGDQ 7096

Query: 121  GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG 180
            G+MFGYATNET+VLMPA ITYAHRL++RQA+VRK GTLPWLRPDAKSQVT +Y+D KIVG
Sbjct: 7095 GIMFGYATNETEVLMPAAITYAHRLMERQAKVRKEGTLPWLRPDAKSQVTLKYEDHKIVG 6916

Query: 181  IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC 240
            +DAVVLSTQH + I Q  L EAVMEEIIKP+LPAEWL+  TK+FINPTGRFVIGGPMGDC
Sbjct: 6915 VDAVVLSTQHCDSISQHDLHEAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDC 6736

Query: 241  GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS 300
            GLTGRKIIVDTYGG ARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQ+S
Sbjct: 6735 GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLS 6556

Query: 301  YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH 360
            YAIGVA+PTSIMVETFGT KV +E L  LVREFFDLRPYGLI+MLDL+ PIY+ETAAYGH
Sbjct: 6555 YAIGVADPTSIMVETFGTGKVANELLVALVREFFDLRPYGLIKMLDLIQPIYRETAAYGH 6376

Query: 361  FGREHFPWEKTDKAQLLRDAAGLK 384
            FGRE FPWEK D+A+ LR AAGLK
Sbjct: 6375 FGREQFPWEKVDRAEELRAAAGLK 6304


  Database: pm
    Posted date:  Nov 9, 2008  6:43 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 811,281
Number of extensions: 10524
Number of successful extensions: 40
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 756,529
Length adjustment: 84
Effective length of query: 300
Effective length of database: 739,393
Effective search space: 221817900
Effective search space used: 221817900
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)