TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= METK_ECOLI P0A817 S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synthetase) (MAT). (384 letters) Database: 3 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008842 AE006468 |AE008842| Salmonella typhimurium LT2, section... 754 0.0 embl|AE006143|AE006143 Pasteurella multocida subsp. multocida st... 655 0.0 AE012176 AE008922 |AE012176| Xanthomonas campestris pv. campestr... 567 e-162 >AE008842 AE006468 |AE008842| Salmonella typhimurium LT2, section 146 of 220 of the complete genome. Length = 22204 Score = 754 bits (1948), Expect = 0.0 Identities = 374/384 (97%), Positives = 382/384 (99%) Frame = +2 Query: 1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS 60 MAKHLFTSESVSEGHPDKIADQISDAVLDAIL+QDPKARVACETYVKTGMVLVGGEITTS Sbjct: 5252 MAKHLFTSESVSEGHPDKIADQISDAVLDAILQQDPKARVACETYVKTGMVLVGGEITTS 5431 Query: 61 AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ 120 AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ Sbjct: 5432 AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ 5611 Query: 121 GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG 180 GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG Sbjct: 5612 GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG 5791 Query: 181 IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC 240 IDAVVLSTQH+E+IDQKSLQEAVMEEIIKPILP+EWL ++TKFFINPTGRFVIGGPMGDC Sbjct: 5792 IDAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLNTSTKFFINPTGRFVIGGPMGDC 5971 Query: 241 GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS 300 GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS Sbjct: 5972 GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS 6151 Query: 301 YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH 360 YAIGVAEPTSIMVETFGTEKVP+EQL LLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH Sbjct: 6152 YAIGVAEPTSIMVETFGTEKVPAEQLILLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH 6331 Query: 361 FGREHFPWEKTDKAQLLRDAAGLK 384 FGRE+FPWEKTDKAQLLRDAAGLK Sbjct: 6332 FGRENFPWEKTDKAQLLRDAAGLK 6403 >embl|AE006143|AE006143 Pasteurella multocida subsp. multocida str. Pm70 section 110 of 204 of the complete genome. Length = 10578 Score = 655 bits (1691), Expect = 0.0 Identities = 320/384 (83%), Positives = 351/384 (91%) Frame = -1 Query: 1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS 60 M+++LFTSESVSEGHPDKIADQISDAVLD IL+QDPKARVACETYVKTGM LVGGEITTS Sbjct: 7455 MSRYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTS 7276 Query: 61 AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ 120 AWVDIE +TR + +IGY HSDMGFD +SCAVL+AIGKQS DINQGVDR +PL+QGAGDQ Sbjct: 7275 AWVDIENLTRQVICDIGYKHSDMGFDGHSCAVLNAIGKQSSDINQGVDRENPLDQGAGDQ 7096 Query: 121 GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVG 180 G+MFGYATNET+VLMPA ITYAHRL++RQA+VRK GTLPWLRPDAKSQVT +Y+D KIVG Sbjct: 7095 GIMFGYATNETEVLMPAAITYAHRLMERQAKVRKEGTLPWLRPDAKSQVTLKYEDHKIVG 6916 Query: 181 IDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDC 240 +DAVVLSTQH + I Q L EAVMEEIIKP+LPAEWL+ TK+FINPTGRFVIGGPMGDC Sbjct: 6915 VDAVVLSTQHCDSISQHDLHEAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDC 6736 Query: 241 GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS 300 GLTGRKIIVDTYGG ARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQ+S Sbjct: 6735 GLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLS 6556 Query: 301 YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH 360 YAIGVA+PTSIMVETFGT KV +E L LVREFFDLRPYGLI+MLDL+ PIY+ETAAYGH Sbjct: 6555 YAIGVADPTSIMVETFGTGKVANELLVALVREFFDLRPYGLIKMLDLIQPIYRETAAYGH 6376 Query: 361 FGREHFPWEKTDKAQLLRDAAGLK 384 FGRE FPWEK D+A+ LR AAGLK Sbjct: 6375 FGREQFPWEKVDRAEELRAAAGLK 6304 >AE012176 AE008922 |AE012176| Xanthomonas campestris pv. campestris str. ATCC 33913, section 84 of 460 of the complete genome. Length = 12556 Score = 567 bits (1462), Expect = e-162 Identities = 281/403 (69%), Positives = 326/403 (80%), Gaps = 19/403 (4%) Frame = -1 Query: 1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS 60 M+ +LFTSESVSEGHPDKIADQISDAVLDAIL QD +ARVACET VKTG+ +V GE+TTS Sbjct: 1723 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTS 1544 Query: 61 AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ 120 AW+D+E +TR + +IGY SD+GFD +C VL+ IGKQSPDINQGVDR +P +QGAGDQ Sbjct: 1543 AWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVDRKNPEQQGAGDQ 1364 Query: 121 GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRK--NGTLPWLRPDAKSQVTFQYDDGKI 178 GLMFGYATNETD MPA I +HRLV++QA++RK N L WLRPDAKSQVT +Y+DG Sbjct: 1363 GLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDGVA 1184 Query: 179 VGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMG 238 IDAVVLST H + QK L EAV EEI+KP+LPA+WL TKF INPTG+FVIGGP+G Sbjct: 1183 TAIDAVVLSTHHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVG 1004 Query: 239 DCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQ 298 DCGLTGRKIIVDTYGG ARHGGGAFSGKDPSKVDRSAAYAARYVAKN+VAAGLADRCE+Q Sbjct: 1003 DCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQ 824 Query: 299 VSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAY 358 VSYAIGVAEPTSI V TFGT K+ E + L+R+ FDLRP+G+IQMLDL+HP+Y++TA+Y Sbjct: 823 VSYAIGVAEPTSISVTTFGTGKIADELIEKLIRKHFDLRPFGIIQMLDLIHPMYQQTASY 644 Query: 359 GHFGRE-----------------HFPWEKTDKAQLLRDAAGLK 384 GHFGR+ F WEKTD+A+ LR AA LK Sbjct: 643 GHFGRKPKDFTYTDGTGAQHSATSFSWEKTDRAEALRAAAKLK 515 Database: 3 Posted date: Nov 1, 2008 10:34 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 5,495,509 Number of extensions: 84412 Number of successful extensions: 451 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 448 Number of HSP's successfully gapped: 3 Length of query: 384 Length of database: 4,081,295 Length adjustment: 95 Effective length of query: 289 Effective length of database: 3,997,315 Effective search space: 1155224035 Effective search space used: 1155224035 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)