BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= KPN2Jun2003_21 [4410 - 2881] (REVERSE SENSE) (510 letters) Database: ep 4855 sequences; 1,534,022 total letters Searching..........done Score E Sequences producing significant alignments: (bits) Value PTGCB_ECOLI P69786 PTS system glucose-specific EIICB component (... 372 e-104 PTW3C_ECOLI P09323 PTS system N-acetylglucosamine-specific EIICB... 314 9e-87 PTOCB_ECOLI P19642 PTS system maltose- and glucose-specific EIIC... 304 1e-83 >PTGCB_ECOLI P69786 PTS system glucose-specific EIICB component (EIICB-Glc) (EII-Glc) [Includes: Glucose permease IIC component (PTS system glucose-specific EIIC component); Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system glucose-specific EIIB component)]. Length = 477 Score = 372 bits (956), Expect = e-104 Identities = 207/492 (42%), Positives = 303/492 (61%), Gaps = 30/492 (6%) Query: 7 NLLQMLQSIGRSLMIPIAMLPAAGILLAFGVSFQDPNIVASLPFLGADWLVHVLK-LMAE 65 N LQ +G+SLM+P+++LP AGILL G + WL V+ +MAE Sbjct: 4 NAFANLQKVGKSLMLPVSVLPIAGILLGVGSA-------------NFSWLPAVVSHVMAE 50 Query: 66 AGSVIFANLPLLFAVGVAVGLSDDQGIAGLSAIAGFLIMNVTIGQFLGITPESVAQVRDY 125 AG +FAN+PL+FA+GVA+G +++ G++ L+A+ + IM T+ + A+ Sbjct: 51 AGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEE--- 107 Query: 126 TMVLGIPSLQTGVFXXXXXXXXAAWLYKRYYRIQLPSWLEFFSGKRFVPIITSFAALFVG 185 + TGV AA+++ R+YRI+LP +L FF+GKRFVPII+ AA+F G Sbjct: 108 --IASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTG 165 Query: 186 LVMAVVWPPVQHLINGLSNTMTVQGPGVSAFLFGFVEQLLIPFGLNHVWWPTFWLQFGEY 245 +V++ +WPP+ I S Q P V+ ++GF+E+ L+PFGL+H+W F +Q GEY Sbjct: 166 VVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEY 225 Query: 246 VNKAGQVVHGDQLIFFAQLKDQVPITAGTFMAGLTPIKMFCIPAIALAIYRCASPENRAR 305 N AGQV HGD + A TAG G KM+ +PA A+AI+ A PENRA+ Sbjct: 226 TNAAGQVFHGDIPRYMAG-----DPTAGKLSGGFL-FKMYGLPAAAIAIWHSAKPENRAK 279 Query: 306 VKGIMLSGAITSIVCGITEPIEFSFLFVAPVLYGIHAVLAGLVFLLMEWFSVHIGLSFSG 365 V GIM+S A+TS + GITEPIEFSF+FVAP+LY IHA+LAGL F + + G SFS Sbjct: 280 VGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSH 339 Query: 366 GLIDYLFFGVLPRAPHWYMVFP-VGLVMGALYYALFTFAIRSWNLLTPGREVEENAVAQE 424 GLID++ VL +FP VG+ +YY +F I++ +L TPGRE + A+ Sbjct: 340 GLIDFI---VLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGRE-DATEDAKA 395 Query: 425 SEQNDLVSGIILAYGGLGNMTSIEACMSRLRIDVTDKTLVDKALLKQLGAAGIVEVGNNI 484 + +++ ++ A+GG N+T+++AC++RLR+ V D + VD+A LK+LGAAG+V G+ + Sbjct: 396 TGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGV 455 Query: 485 QSVFGMKSDRLK 496 Q++FG KSD LK Sbjct: 456 QAIFGTKSDNLK 467 Database: ep Posted date: Oct 3, 2006 10:20 PM Number of letters in database: 1,534,022 Number of sequences in database: 4855 Lambda K H 0.327 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,540,376 Number of Sequences: 4855 Number of extensions: 68823 Number of successful extensions: 276 Number of sequences better than 1.0e-03: 7 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 9 length of query: 510 length of database: 1,534,022 effective HSP length: 89 effective length of query: 421 effective length of database: 1,101,927 effective search space: 463911267 effective search space used: 463911267 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits)