BLASTP 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= swissprot|P0A7B8|HSLV_ECOLI ATP-dependent protease hslV;
         (176 letters)

Database: orf 
           13 sequences; 610 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D89965_13                                                             216   3e-61
D89965_5                                                               15   1.4  

>D89965_13
          Length = 125

 Score =  216 bits (550), Expect = 3e-61
 Identities = 113/125 (90%), Positives = 113/125 (90%)

Query: 1   MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIXXXXXXXXXXXXLFEL 60
           MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI            LFEL
Sbjct: 1   MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFEL 60

Query: 61  FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL 120
           FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL
Sbjct: 61  FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL 120

Query: 121 IAIGS 125
           IAIGS
Sbjct: 121 IAIGS 125


>D89965_5
          Length = 138

 Score = 15.0 bits (27), Expect = 1.4
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 12 HVVIAGD 18
          HV + GD
Sbjct: 7  HVTVTGD 13


  Database: orf
    Posted date:  Nov 8, 2008 12:57 PM
  Number of letters in database: 610
  Number of sequences in database:  13
  
Lambda     K      H
   0.318    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13
Number of Hits to DB: 251
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 610
Length adjustment: 23
Effective length of query: 153
Effective length of database: 311
Effective search space:    47583
Effective search space used:    47583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.1 bits)
S2: 20 (12.3 bits)