BLASTP 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAA14040.1  
         (90 letters)

Database: orf 
           13 sequences; 610 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D89965_5                                                              187   9e-53
D89965_13                                                              12   6.6  

>D89965_5
          Length = 138

 Score =  187 bits (475), Expect = 9e-53
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1   MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM 60
           MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM
Sbjct: 49  MALMHFQFTFKQFEQRKSIRSTARKARDDFVVVQTADLFHVAFHYGIAQRGLTITSDDHM 108

Query: 61  AVTAYAYYSCHELTPWLRIQSTNPVQKYGA 90
           AVTAYAYYSCHELTPWLRIQSTNPVQKYGA
Sbjct: 109 AVTAYAYYSCHELTPWLRIQSTNPVQKYGA 138



 Score = 14.6 bits (26), Expect = 1.0
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 52 LTITSDD 58
          +T+T DD
Sbjct: 8  VTVTGDD 14


>D89965_13
          Length = 125

 Score = 11.9 bits (19), Expect = 6.6
 Identities = 4/10 (40%), Positives = 6/10 (60%)

Query: 8  FTFKQFEQRK 17
          FT  +  +RK
Sbjct: 55 FTLFELFERK 64


  Database: orf
    Posted date:  Nov 8, 2008 12:57 PM
  Number of letters in database: 610
  Number of sequences in database:  13
  
Lambda     K      H
   0.327    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13
Number of Hits to DB: 201
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 610
Length adjustment: 19
Effective length of query: 71
Effective length of database: 363
Effective search space:    25773
Effective search space used:    25773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.4 bits)
S2: 18 (11.5 bits)