BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gene_pyrd_ecoli (1011 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008746 AE006468 |AE008746| Salmonella typhimurium LT2, section... 807 0.0 >AE008746 AE006468 |AE008746| Salmonella typhimurium LT2, section 50 of 220 of the complete genome. Length = 22288 Score = 807 bits (407), Expect = 0.0 Identities = 860/1011 (85%) Strand = Plus / Plus Query: 1 atgtactaccccttcgttcgtaaagcccttttccagctcgatccagagcgcgctcatgag 60 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 atgtactatcccttcgttcgtaaagcccttttccagctcgatccagagcgcgctcatgaa 243 Query: 61 tttacttttcagcaattacgccgtattacaggaacgccgtttgaagcactggtgcggcag 120 ||||| ||||| ||||||||||| |||||||| |||||| | ||||| |||||||| ||| Sbjct: 244 tttacatttcaacaattacgccgcattacaggtacgccgctggaagcgctggtgcgccag 303 Query: 121 aaagtgcctgcgaaacctgttaactgcatgggcctgacgtttaaaaatccgcttggtctg 180 ||||| || | || || |||| ||||||||| || || ||||||||||| || || ||| Sbjct: 304 aaagtaccgacaaagccggttacctgcatgggacttacctttaaaaatccactggggctg 363 Query: 181 gcagccggtcttgataaagacggggagtgcattgacgcgttaggcgcgatgggatttgga 240 || |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 364 gctgccggtctggataaagacggggagtgcatcgacgcgttaggcgcgatggggtttggc 423 Query: 241 tcgatcgagatcggtaccgtcacgccacgtccacagccaggtaatgacaagccgcgtctc 300 || | || ||||| ||||| ||||| || |||||||| ||||| || ||||||||||| Sbjct: 424 tccctggaaatcggcaccgtgacgccgcgcccacagccgggtaacgataagccgcgtctt 483 Query: 301 tttcgtctggtagatgccgaaggtttgatcaaccgtatgggctttaataatcttggcgtt 360 ||||||||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| Sbjct: 484 tttcgtctggtggatgctgaaggtctgatcaatcggatgggctttaataatctgggcgtc 543 Query: 361 gataacctcgtagagaacgtaaaaaaggcccattatgacggcgtcctgggtattaacatc 420 |||||||| || ||||| || ||||| ||||||| ||| || | ||||| ||||||||| Sbjct: 544 gataacctggtcgagaatgttaaaaaagcccattttgatggtattctgggaattaacatc 603 Query: 421 ggcaaaaataaagatacgccagtggagcagggcaaagatgactatctgatttgtatggaa 480 || ||||||||||||||||| || || | |||||||||||||| ||||||||||||||| Sbjct: 604 ggtaaaaataaagatacgcctgtcgaaaatggcaaagatgactacctgatttgtatggaa 663 Query: 481 aaaatctatgcctatgcgggatatatcgccatcaatatttcatcgccgaataccccagga 540 ||| ||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| Sbjct: 664 aaagtctatgcttatgcgggttatatcgccattaatatttcttcgccgaatacgccaggg 723 Query: 541 ttacgcacgctgcaatatggtgaagcgctggatgatctcttaaccgcgattaaaaataag 600 |||| ||||| || ||||| || |||||||| ||||| ||||| || |||||||||||| Sbjct: 724 ctacgtacgctccagtatggcgatgcgctggacgatctgttaactgccattaaaaataag 783 Query: 601 caaaatgatttgcaagcgatgcaccataaatatgtgccgatcgcagtgaagatcgcgccg 660 ||||| ||| | || ||||| |||||||||||||||||| | ||||| |||||||||||| Sbjct: 784 caaaacgatcttcaggcgatccaccataaatatgtgccggtggcagtaaagatcgcgccg 843 Query: 661 gatctttctgaagaagaattgatccaggttgccgatagtttagttcgccataatattgat 720 ||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||| Sbjct: 844 gatctttgtgaagaagaattgatccaggttgccgatagcctgcttcgtcataatattgat 903 Query: 721 ggcgttattgcaaccaataccacactcgatcgttctcttgttcagggaatgaaaaattgc 780 || || ||||| || |||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 904 ggggtgattgcgacaaataccaccctcgatcgttctctggtacaaggaatgaaaaattgc 963 Query: 781 gatcaaaccggtggcttaagtggtcgtccgcttcagttaaaaagcaccgaaattattcgc 840 | ||||| || || |||||||| || || | || ||||||||||| |||||||||||| Sbjct: 964 cagcaaacggggggattaagtggccggccattacaattaaaaagcacagaaattattcgc 1023 Query: 841 cgcttgtcactggaattaaacggtcgcttaccgatcatcggtgttggcggcatcgactcg 900 || || || | ||| ||||| || | || || || ||||| || |||||||| ||||| Sbjct: 1024 cgtttatcccaggagttaaagggacaattgcctattatcggcgtcggcggcattgactca 1083 Query: 901 gttatcgctgcgcgtgaaaagattgctgcgggtgcctcactggtgcaaatttattctggt 960 |||||||| ||||| || ||||| || || || || | ||||| ||||||||||| || Sbjct: 1084 gttatcgccgcgcgcgagaagatagcggcaggagctacgctggtacaaatttattccggc 1143 Query: 961 tttatttttaaaggtccgccgctgattaaagaaatcgttacccatatctaa 1011 |||||||||||||| ||||| |||||||||||||||| || || |||||| Sbjct: 1144 tttatttttaaaggcccgccattgattaaagaaatcgtaacgcacatctaa 1194 Database: all Posted date: Nov 1, 2008 1:41 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 143,386 Number of extensions: 8134 Number of successful extensions: 41 Number of sequences better than 1.0e-03: 1 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 1 Length of query: 1011 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 994 Effective length of database: 12,228,859 Effective search space: 12155485846 Effective search space used: 12155485846 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)