TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PYRD_ECOLI Dihydroorotate dehydrogenase (336 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008746 AE006468 |AE008746| Salmonella typhimurium LT2, section... 620 e-178 embl|AE006098|AE006098 Pasteurella multocida subsp. multocida st... 399 e-112 AE012280 AE008922 |AE012280| Xanthomonas campestris pv. campestr... 310 3e-85 >AE008746 AE006468 |AE008746| Salmonella typhimurium LT2, section 50 of 220 of the complete genome. Length = 22288 Score = 620 bits (1599), Expect = e-178 Identities = 309/336 (91%), Positives = 318/336 (94%) Frame = +1 Query: 1 MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGL 60 MYYPFVRKALFQLDPERAHEFTFQQLRRITGTP EALVRQKVP KPV CMGLTFKNPLGL Sbjct: 184 MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLEALVRQKVPTKPVTCMGLTFKNPLGL 363 Query: 61 AAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV 120 AAGLDKDGECIDALGAMGFGS+EIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV Sbjct: 364 AAGLDKDGECIDALGAMGFGSLEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV 543 Query: 121 DNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKXXXXXXXXXXNISSPNTPG 180 DNLVENVKKAH+DG+LGINIGKNKDTPVE GKDDYLICMEK NISSPNTPG Sbjct: 544 DNLVENVKKAHFDGILGINIGKNKDTPVENGKDDYLICMEKVYAYAGYIAINISSPNTPG 723 Query: 181 LRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNID 240 LRTLQYG+ALDDLLTAIKNKQNDLQA+HHKYVP+AVKIAPDL EEELIQVADSL+RHNID Sbjct: 724 LRTLQYGDALDDLLTAIKNKQNDLQAIHHKYVPVAVKIAPDLCEEELIQVADSLLRHNID 903 Query: 241 GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS 300 GVIATNTTLDRSLVQGMKNC QTGGLSGRPLQLKSTEIIRRLS EL G+LPIIGVGGIDS Sbjct: 904 GVIATNTTLDRSLVQGMKNCQQTGGLSGRPLQLKSTEIIRRLSQELKGQLPIIGVGGIDS 1083 Query: 301 VIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336 VIAAREKIAAGA+LVQIYSGFIFKGPPLIKEIVTHI Sbjct: 1084VIAAREKIAAGATLVQIYSGFIFKGPPLIKEIVTHI 1191 >embl|AE006098|AE006098 Pasteurella multocida subsp. multocida str. Pm70 section 65 of 204 of the complete genome. Length = 10687 Score = 399 bits (1026), Expect = e-112 Identities = 202/337 (59%), Positives = 246/337 (72%), Gaps = 3/337 (0%) Frame = -3 Query: 3 YPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA---KPVNCMGLTFKNPLG 59 Y +RKALF LD E+AH+ T + L+ + +PF L++ P MGL FKNP+G Sbjct: 5999 YALIRKALFSLDAEQAHDLTIKTLKTLGRSPFNPLLKTLFACPTGSPKTIMGLHFKNPIG 5820 Query: 60 LAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLG 119 LAAG DK+GE I+ AMGFG IE+GTVTP Q GN KPR FRL +AEG+INR GFNN G Sbjct: 5819 LAAGADKNGEAIEGFAAMGFGFIEVGTVTPLAQEGNPKPRQFRLPEAEGIINRNGFNNYG 5640 Query: 120 VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKXXXXXXXXXXNISSPNTP 179 +D L+ENVK A+YDG+LGINIGKN T VE GK DYLIC+ K NISSPN+P Sbjct: 5639 IDYLIENVKHANYDGILGINIGKNTFTSVENGKADYLICLNKAYHYADYITINISSPNSP 5460 Query: 180 GLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNI 239 GLR LQYGEAL+DLL +K +Q DL + KYVPIAVKIAPDL+E E++Q+AD+L RH + Sbjct: 5459 GLRQLQYGEALEDLLQGVKARQKDLAEQYQKYVPIAVKIAPDLTEGEVVQIADTLQRHKM 5280 Query: 240 DGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGID 299 D VIATNTT+ R V G++N +Q GGLSG+PLQ KSTEII RL EL G++PIIG GGID Sbjct: 5279 DAVIATNTTISRDTVSGLQNAEQQGGLSGKPLQQKSTEIIARLHQELKGQIPIIGSGGID 5100 Query: 300 SVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336 SV A+EKI AGA L+Q+YSG I+ GP LIK++V I Sbjct: 5099 SVANAQEKIKAGAELLQLYSGLIYHGPHLIKQLVQQI 4989 >AE012280 AE008922 |AE012280| Xanthomonas campestris pv. campestris str. ATCC 33913, section 188 of 460 of the complete genome. Length = 10801 Score = 310 bits (795), Expect = 3e-85 Identities = 173/335 (51%), Positives = 214/335 (63%), Gaps = 1/335 (0%) Frame = -1 Query: 3 YPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPLGLAA 62 Y R LF D ERAH + + T ALV + P GL F NP+GL A Sbjct: 9544 YSLARPFLFAFDAERAHALALRAIDTAYRTGTTALVATRPVPLPTPAFGLMFPNPVGLGA 9365 Query: 63 GLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN 122 GLDK+GE IDAL A+GFG +EIGTVTP+PQ GN KPR+FRL + + +INRMGFNNLGVD Sbjct: 9364 GLDKNGEHIDALLALGFGFVEIGTVTPKPQEGNPKPRMFRLPEYQAVINRMGFNNLGVDV 9185 Query: 123 LVENVKKAHY-DGVLGINIGKNKDTPVEQGKDDYLICMEKXXXXXXXXXXNISSPNTPGL 181 LV+NV++A G+LGINIGKNKDTP E+ DY CME+ NISSPNT GL Sbjct: 9184 LVKNVQRARRRGGLLGINIGKNKDTPNEEATSDYRYCMERVYPLADYITVNISSPNTAGL 9005 Query: 182 RTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDG 241 R LQ +AL L+ ++ Q L A H K VP+ VK+APDL++ ++ A L +DG Sbjct: 9004 RELQEEQALRRLIADLRETQEALAAQHGKRVPMLVKVAPDLNDRDIDAAARVLADLAVDG 8825 Query: 242 VIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSV 301 VIATNTT+ R+LV +Q GGLSG PL +ST ++RRL L +P+IGVGGI S Sbjct: 8824 VIATNTTVTRTLVASHPMAEQAGGLSGAPLLGQSTLVLRRLRARLPESIPLIGVGGITSG 8645 Query: 302 IAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336 A K+AAGASLVQ YSG +++GP LI E V I Sbjct: 8644 ADAVAKMAAGASLVQCYSGLVYRGPRLIGECVDAI 8540 Database: all Posted date: Nov 1, 2008 1:41 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.319 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 4,242,491 Number of extensions: 60793 Number of successful extensions: 295 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 3 Length of query: 336 Length of database: 4,081,295 Length adjustment: 94 Effective length of query: 242 Effective length of database: 3,998,199 Effective search space: 967564158 Effective search space used: 967564158 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)