TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= aroE description
         (272 letters)

Database: vc 
           344 sequences; 4,053,984 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE004096|AE004096 Vibrio cholerae O1 biovar eltor str. N169...   245   4e-66
embl|AE004120|AE004120 Vibrio cholerae O1 biovar eltor str. N169...    28   0.73 
embl|AE004246|AE004246 Vibrio cholerae O1 biovar eltor str. N169...    26   4.7  

>embl|AE004096|AE004096 Vibrio cholerae O1 biovar eltor str. N16961
            chromosome I, section 4 of 251 of the complete
            chromosome.
          Length = 10846

 Score =  245 bits (625), Expect = 4e-66
 Identities = 126/271 (46%), Positives = 171/271 (63%), Gaps = 1/271 (0%)
 Frame = +2

Query: 1    METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60
            ++ YAVFGNPI HSKSPFIH  FA+Q      Y     P++ F      FF+ GG+G NV
Sbjct: 6857 IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNV 7036

Query: 61   TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120
            TVPFKEEA+  AD LTERA LAGAVNTL +L+DG +LGDNTDG GL+ DL          
Sbjct: 7037 TVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGA 7216

Query: 121  XXXXXXXXXXSRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGH 179
                      +RGVL PLL     ++T+TNRT ++AE+LA+L A  G ++A + ++L+  
Sbjct: 7217 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK-Q 7393

Query: 180  EFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLG 239
             +D+IIN+TS+ + G++PAI   +      CYDM Y KG T F  W  Q G  +  DGLG
Sbjct: 7394 SYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLG 7573

Query: 240  MLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL 270
            MLV QAA +F+LW G+ P  + ++++L++ L
Sbjct: 7574 MLVGQAAESFMLWRGLRPGTKQILRELRKNL 7666


>embl|AE004120|AE004120 Vibrio cholerae O1 biovar eltor str. N16961
            chromosome I, section 28 of 251 of the complete
            chromosome.
          Length = 9995

 Score = 28.5 bits (62), Expect = 0.73
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 5    AVFGNPIAHSKSPFIHQQFAQQLNIEHP 32
            AV GN  +  K+P I QQ   +L IEHP
Sbjct: 3195 AVMGNAGSFFKNPVISQQAFARLQIEHP 3278


>embl|AE004246|AE004246 Vibrio cholerae O1 biovar eltor str. N16961
            chromosome I, section 154 of 251 of the complete
            chromosome.
          Length = 10332

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 249  FLLWHGVLPDVEPVI 263
            +LLWH + P++ P+I
Sbjct: 5925 YLLWHSIFPNILPII 5969


  Database: vc
    Posted date:  Oct 1, 2006  1:34 PM
  Number of letters in database: 4,053,984
  Number of sequences in database:  344
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,084,232
Number of Sequences: 344
Number of extensions: 14208
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 26
length of query: 272
length of database: 1,351,328
effective HSP length: 84
effective length of query: 188
effective length of database: 1,322,432
effective search space: 248617216
effective search space used: 248617216
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)