TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aroE description (272 letters) Database: pa 529 sequences; 6,296,083 total letters Searching..done Score E Sequences producing significant alignments: (bits) Value embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of... 241 6e-65 embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 o... 70 3e-13 embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 o... 28 1.1 embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 ... 28 1.5 embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 o... 27 3.3 embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 o... 27 4.3 embl|AE004943|AE004943 Pseudomonas aeruginosa PAO1, section 504 ... 26 7.3 embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 o... 26 7.3 embl|AE004622|AE004622 Pseudomonas aeruginosa PAO1, section 183 ... 25 9.5 >embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of 529 of the complete genome. Length = 10141 Score = 241 bits (616), Expect = 6e-65 Identities = 136/274 (49%), Positives = 165/274 (60%), Gaps = 3/274 (1%) Frame = +3 Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 M+ Y VFGNPI HSKSP IH+ FA+Q Y LAP++DF FF G KGANV Sbjct: 1101 MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQG-KGANV 1277 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDL-ERLSFXXXX 119 TVPFKEEA+ DEL+ERA AGAVNTL+RL DGRL GDNTDG GLL DL Sbjct: 1278 TVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRG 1457 Query: 120 XXXXXXXXXXXSRGVLLPLL-SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEG 178 RGVL P L + I NRT +A +LA+ FA G++ E+EG Sbjct: 1458 KRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEG 1637 Query: 179 HEFDLIINATSSGISGDIPAIPSSLIHPG-IYCYDMFYQKGKTPFLAWCEQRGSKRNADG 237 FDLI+N TS+ ++GD+P + S+I PG CYDM Y K T F W +RG+ R DG Sbjct: 1638 -PFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDG 1814 Query: 238 LGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELS 271 LGMLV QAA AF LW GV P PV++ L+ +L+ Sbjct: 1815 LGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLA 1916 >embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 of 529 of the complete genome. Length = 9953 Score = 70.5 bits (171), Expect = 3e-13 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 11/264 (4%) Frame = -2 Query: 6 VFGNPIAHSKSPFIHQQFAQQLNIEHPYGRV-LAPINDFINTLNAFFSA----GGKGANV 60 + G I S++P +H++ I + Y + L P+ + L +A G G NV Sbjct: 7741 LIGAGIQASRTPALHEREGDAQGIRYLYRLIDLDPLGKSADDLEFLLAAASDLGFTGLNV 7562 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120 T P K+ D+L+ A GAVNT++ L DGR +G NTD +G R Sbjct: 7561 TFPCKQAIIPLLDDLSAEARGIGAVNTVV-LRDGRRIGHNTDCLGFAEGFRRGLADAPRQ 7385 Query: 121 XXXXXXXXXXSRGVLLPLLSLDC-AVTITNRTVSRAEELA-KLFAHTGSIQALSMDELEG 178 V LL+ + + + +RA+ LA L H G+ +AL+ +L G Sbjct: 7384 RVVQMGAGGAGAAVAHALLAEGVERLVLFDVDPARAQALADNLNQHFGAPRALAGSDLAG 7205 Query: 179 HEFDL--IINATSSGISGDIPA--IPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRN 234 D ++N T G++ +P +P+ L+ ++ ++ Y +T L G R Sbjct: 7204 ALGDAQGLVNTTPVGMA-KLPGMPVPAELLRADLWVAEVIYFPLETELLRQARALGC-RT 7031 Query: 235 ADGLGMLVAQAAHAFLLWHGVLPD 258 DG M V QA AF L+ GV D Sbjct: 7030 LDGGTMAVFQAVKAFELFSGVTAD 6959 >embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 of 529 of the complete genome. Length = 12874 Score = 28.5 bits (62), Expect = 1.1 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 65 KEEAFARADELTERAALAGAVNTL 88 ++EAFARA + ER LAG TL Sbjct: 9729 RDEAFARARQALERTVLAGMATTL 9800 >embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 of 529 of the complete genome. Length = 10935 Score = 28.1 bits (61), Expect = 1.5 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%) Frame = -3 Query: 151 TVSRAEELAKLFAHTGSI----QALSMDELEGHEFDLII 185 TV ELA+ AH GSI +L+++ + G EF+L I Sbjct: 1510 TVRAPRELARYIAHKGSITVDGTSLTVNAVNGAEFELTI 1394 >embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 of 529 of the complete genome. Length = 10832 Score = 26.9 bits (58), Expect = 3.3 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -2 Query: 33 YGRVLAPINDFINTLNAFFSAGGKGANV-TVPFKEEAFARAD 73 YG L P+ND +SAG N+ +P +E AR D Sbjct: 277 YGEKLKPVNDEAKAWKTVWSAGQGAGNIDDLPGVDELVARLD 152 >embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 of 529 of the complete genome. Length = 11276 Score = 26.6 bits (57), Expect = 4.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -1 Query: 194 GDIPAIPSSLIHPG 207 GD+P +P +L HPG Sbjct: 8360 GDVPPVPGTLFHPG 8319 >embl|AE004943|AE004943 Pseudomonas aeruginosa PAO1, section 504 of 529 of the complete genome. Length = 12834 Score = 25.8 bits (55), Expect = 7.3 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 11/47 (23%) Frame = -2 Query: 187 ATSSGISGDI-----------PAIPSSLIHPGIYCYDMFYQKGKTPF 222 A S G+ G+I P +PS + PGI Y G TPF Sbjct: 2006 AASQGLEGEISLRNSPAVLGWPKVPSDWVRPGILLY------GATPF 1884 >embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 of 529 of the complete genome. Length = 13946 Score = 25.8 bits (55), Expect = 7.3 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +2 Query: 143 CAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDL--IINATSSGISG 194 C ++T T SR E G+IQAL ++EG + + I A G++G Sbjct: 7373 CQSSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPIGSIAGAGVGGVAG 7534 >embl|AE004622|AE004622 Pseudomonas aeruginosa PAO1, section 183 of 529 of the complete genome. Length = 10163 Score = 25.4 bits (54), Expect = 9.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 229 RGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQ 265 R S+ AD +LVA+ AHA H ++ V+P + Q Sbjct: 8832 RRSQAPADQRRVLVAEFAHAQCHVHPLVEQVDPAVGQ 8942 Database: pa Posted date: Oct 1, 2006 1:36 PM Number of letters in database: 6,296,083 Number of sequences in database: 529 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,853,782 Number of Sequences: 529 Number of extensions: 27457 Number of successful extensions: 158 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 70 length of query: 272 length of database: 2,098,694 effective HSP length: 87 effective length of query: 185 effective length of database: 2,052,671 effective search space: 379744135 effective search space used: 379744135 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)