1: Liu T, Liu Y, Kao HY, Pei D. Membrane Permeable Cyclic Peptidyl Inhibitors
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2: Pei D. On-bead library screening made easier. Chem Biol. 2010 Jan
29;17(1):3-4. PubMed PMID: 20142032.

3: Cai J, Li W, Su H, Qin D, Yang J, Zhu F, Xu J, He W, Guo H, Labuda K,
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Pei D. Generation of human induced pluripotent stem cells from umbilical cord
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4: Nie J, Pei D. Expression and purification of membrane-type MMPs. Methods Mol
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5: Wu CZ, Pei D, Su CC, Hsiao FC, Chu YM, Lee LH, Wang K, Hsieh AT, Lin JD, Hsia 
TL. Comparison of oral glucose insulin sensitivity with other insulin sensitivity
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2010 Jan;39(1):4-8. PubMed PMID: 20126806.

6: Esteban MA, Peng M, Deli Z, Cai J, Yang J, Xu J, Lai L, Pei D. Porcine induced
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7: Pei D. The Mighty Mice Prove Pluripotency for iPSCs. J Mol Cell Biol. 2010 Jan
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8: Su SC, Pei D, Hsieh CH, Hsiao FC, Wu CZ, Hung YJ. Circulating pro-inflammatory
cytokines and adiponectin in young men with type 2 diabetes. Acta Diabetol. 2010 
Jan 8. [Epub ahead of print] PubMed PMID: 20058158.

9: Esteban MA, Wang T, Qin B, Yang J, Qin D, Cai J, Li W, Weng Z, Chen J, Ni S,
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generation of mouse and human induced pluripotent stem cells. Cell Stem Cell.
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10: Cai Q, Li Z, Wei J, Ha C, Pei D, Ding K. Assembly of indole-2-carboxylic acid
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11: Pui CH, Pei D, Sandlund JT, Ribeiro RC, Rubnitz JE, Raimondi SC, Onciu M,
Campana D, Kun LE, Jeha S, Cheng C, Howard SC, Metzger ML, Bhojwani D, Downing
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12: Liang Y, Zhong Z, Huang Y, Deng W, Cao J, Tsao G, Liu Q, Pei D, Kang T, Zeng 
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13: Hsiao FC, Wu CZ, Su SC, Sun MT, Hsieh CH, Hung YJ, He CT, Pei D. Baseline
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14: Zarzeczny A, Scott C, Hyun I, Bennett J, Chandler J, Chargé S, Heine H, Isasi
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11;139(6):1032-7. PubMed PMID: 20005794.

15: Lin JD, Hsia TL, Wu CZ, Su CC, Ma WY, Hsieh AT, Hsieh CH, Wang K, Chu YM, Pei
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16: Wang Y, Ji HX, Zheng JN, Pei DS, Hu SQ, Qiu SL. Protective effect of selenite
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17: Treviño LR, Shimasaki N, Yang W, Panetta JC, Cheng C, Pei D, Chan D,
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variation in an organic anion transporter polypeptide associated with
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18: Chen CH, Sun YH, Pei DS, Zhu ZY. Comparative expression of zebrafish lats1
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19: Zhang Y, Wavreille AS, Kunys AR, Pei D. The SH2 domains of inositol
polyphosphate 5-phosphatases SHIP1 and SHIP2 have similar ligand specificity but 
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20: Li T, Yu HM, Sun YF, Song YJ, Zhang GY, Pei DS. Inhibition of cerebral
ischemia/reperfusion-induced injury by adenovirus expressed C-terminal amino
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21: Li C, Xu B, Wang WW, Yu XJ, Zhu J, Yu HM, Han D, Pei DS, Zhang GY.
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22: Wnuk SF, Robert J, Sobczak AJ, Meyers BP, Malladi VL, Zhu J, Gopishetty B,
Pei D. Inhibition of S-ribosylhomocysteinase (LuxS) by substrate analogues
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23: Lu N, Zhou G, Pei D, Yi L, Gao Z. Peroxynitrite and heme protein--mediated
nitrative/oxidative modification of human plasma protein: the role of free
radical scavenging vs. complex forming. Toxicol In Vitro. 2009 Oct;23(7):1227-33.
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24: Zhou J, Duan L, Chen H, Ren X, Zhang Z, Zhou F, Liu J, Pei D, Ding K.
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25: Hu SQ, Zhu J, Pei DS, Zong YY, Yan JZ, Hou XY, Zhang GY. Overexpression of
the PDZ1 domain of PSD-95 diminishes ischemic brain injury via inhibition of the 
GluR6.PSD-95.MLK3 pathway. J Neurosci Res. 2009 Dec;87(16):3626-38. PubMed PMID: 
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26: Lin E, Pei D, Huang YJ, Hsieh CH, Wu LS. Gene-gene interactions among genetic
variants from obesity candidate genes for nonobese and obese populations in type 
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27: Pei DE, Peng JS, Liu MQ. [A study of mix-infections with different genotypes 
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28: Pui CH, Campana D, Pei D, Bowman WP, Sandlund JT, Kaste SC, Ribeiro RC,
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29: Wu LS, Hsieh CH, Pei D, Hung YJ, Kuo SW, Lin E. Association and interaction
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30: Zheng JN, Pei DS, Mao LJ, Liu XY, Sun FH, Zhang BF, Liu YQ, Liu JJ, Li W, Han
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31: Zhang J, Zhang X, Guo Y, Xu L, Pei D. Sorting nexin 33 induces mammalian cell
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32: Yu CZ, Li C, Pei DS, Zong YY, Shi Q, Wen XR, Guan QH, Hang D, Hou XY, Zhang
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33: Ekici OD, Zhu J, Wah Chung IY, Paetzel M, Dalbey RE, Pei D. Profiling the
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34: Chen X, Tan PH, Zhang Y, Pei D. On-bead screening of combinatorial libraries:
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35: Boston RC, Pei D, Moate PJ. A numerical deconvolution method to estimate
C-peptide secretion in humans after an intravenous glucose tolerance test.
Metabolism. 2009 Jul;58(7):891-900. PubMed PMID: 19394979.

36: Esteban MA, Xu J, Yang J, Peng M, Qin D, Li W, Jiang Z, Chen J, Deng K, Zhong
M, Cai J, Lai L, Pei D. Generation of induced pluripotent stem cell lines from
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37: Wu CZ, Lin JD, Li JC, Kuo SW, Hsieh CH, Lian WC, Lee CH, Wan HL, Hung YJ, Pei
D. Association between white blood cell count and components of metabolic
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38: Ma T, Wang Z, Guo Y, Pei D. The C-terminal pentapeptide of Nanog tryptophan
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39: Zheng JN, Pei DS, Sun FH, Liu XY, Mao LJ, Zhang BF, Wen RM, Xu W, Shi Z, Liu 
JJ, Li W. Potent antitumor efficacy of interleukin-18 delivered by conditionally 
replicative adenovirus vector in renal cell carcinoma-bearing nude mice via
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40: Jeha S, Pei D, Raimondi SC, Onciu M, Campana D, Cheng C, Sandlund JT, Ribeiro
RC, Rubnitz JE, Howard SC, Downing JR, Evans WE, Relling MV, Pui CH. Increased
risk for CNS relapse in pre-B cell leukemia with the t(1;19)/TCF3-PBX1. Leukemia.
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41: Pei DS, Sun YF, Song YJ. S-nitrosylation of PTEN Invovled in ischemic brain
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42: Wu CZ, Hsiao FC, Lin JD, Su CC, Wang KS, Chu YM, Lee LH, Wang K, Hsia TL, Pei
D. Relationship between white blood cell count and components of metabolic
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43: Chen N, Wang W, Huang Y, Shen P, Pei D, Yu H, Shi H, Zhang Q, Xu J, Lv Y, Fan
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44: Pei D. 2008: year of the rat for stem cell research. Cell Res. 2009
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45: Yang JJ, Cheng C, Yang W, Pei D, Cao X, Fan Y, Pounds SB, Neale G, Treviño
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Camitta BM, Willman CL, Davies SM, Borowitz MJ, Carroll WL, Hunger SP, Relling
MV. Genome-wide interrogation of germline genetic variation associated with
treatment response in childhood acute lymphoblastic leukemia. JAMA. 2009 Jan
28;301(4):393-403. PubMed PMID: 19176441; PubMed Central PMCID: PMC2664534.

46: Thakkar A, Cohen AS, Connolly MD, Zuckermann RN, Pei D. High-throughput
sequencing of peptoids and Peptide-peptoid hybrids by partial edman degradation
and mass spectrometry. J Comb Chem. 2009 Mar-Apr;11(2):294-302. PubMed PMID:
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47: Coustan-Smith E, Mullighan CG, Onciu M, Behm FG, Raimondi SC, Pei D, Cheng C,
Su X, Rubnitz JE, Basso G, Biondi A, Pui CH, Downing JR, Campana D. Early T-cell 
precursor leukaemia: a subtype of very high-risk acute lymphoblastic leukaemia.
Lancet Oncol. 2009 Feb;10(2):147-56. Epub 2009 Jan 13. PubMed PMID: 19147408.

48: Hsiao FC, Wu CZ, Hsieh CH, He CT, Hung YJ, Pei D. Chinese metabolic syndrome 
risk score. South Med J. 2009 Feb;102(2):159-64. PubMed PMID: 19139715.

49: Wang X, Wilson MJ, Slaton JW, Sinha AA, Ewing SL, Pei D. Increased
aggressiveness of human prostate PC-3 tumor cells expressing cell surface
localized membrane type-1 matrix metalloproteinase (MT1-MMP). J Androl. 2009
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50: Pei DA, Li L, Xu ZY, Huang JY, Xu ZM, Wang M. [Atrial 11beta-hydroxysteroid
dehydrogenase type 2 expression in rheumatic heart disease patients with or
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51: Gopishetty B, Zhu J, Rajan R, Sobczak AJ, Wnuk SF, Bell CE, Pei D. Probing
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52: Pottier N, Yang W, Assem M, Panetta JC, Pei D, Paugh SW, Cheng C, Den Boer
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53: Assumpção JG, Seidinger AL, Mastellaro MJ, Ribeiro RC, Zambetti GP, Ganti R, 
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54: Zheng JN, Pei DS, Sun FH, Zhang BF, Liu XY, Gu JF, Liu YH, Hu XL, Mao LJ, Wen
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55: Zhang X, Zhang J, Wang T, Esteban MA, Pei D. Esrrb activates Oct4
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56: Sun YF, Pei DS, Zhang QX, Zhang GY. Neuroprotection of GST, an extract of
traditional Chinese herb, against ischemic brain injury induced by transient
brain ischemia and reperfusion in rat hippocampus. Neurol Res. 2008
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57: Hsieh CH, Wu CZ, Hsiao FC, Lin JD, Li JC, Wan HL, Kuo SW, Hung YJ, Su CC, Pei
D; Taiwan Early-Onset Type 2 Diabetes Cohort. The impact of metabolic syndrome on
insulin sensitivity, glucose sensitivity, and acute insulin response after
glucose load in early-onset type 2 diabetes mellitus: Taiwan Early-Onset Type 2
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58: Wang Y, Pei DS, Ji HX, Xing SH. Protective effect of a standardized Ginkgo
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59: Qin D, Gan Y, Shao K, Wang H, Li W, Wang T, He W, Xu J, Zhang Y, Kou Z, Zeng 
L, Sheng G, Esteban MA, Gao S, Pei D. Mouse meningiocytes express Sox2 and yield 
high efficiency of chimeras after nuclear reprogramming with exogenous factors. J
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60: Pei D. Regulation of pluripotency and reprogramming by transcription factors.
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61: Gopishetty B, Ren L, Waller TM, Wavreille AS, Lopez M, Thakkar A, Zhu J, Pei 
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62: Liu J, Sun YH, Wang YW, Wang N, Pei DS, Wang YP, Hu W, Zhu ZY. Identification
of differential transcript profiles between mutual crossbred embryos of zebrafish
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63: Zheng JN, Pei DS, Mao LJ, Liu XY, Mei DD, Zhang BF, Shi Z, Wen RM, Sun XQ.
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adenovirus armed short hairpin RNA targeting Ki-67 encoding mRNA. Cancer Gene
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64: Stocco G, Cheok MH, Crews KR, Dervieux T, French D, Pei D, Yang W, Cheng C,
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65: Chen J, Li C, Pei DS, Han D, Liu XM, Jiang HX, Wang XT, Guan QH, Wen XR, Hou 
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66: Pei DS, Sun YH, Zhu ZY. Identification of a novel gene K23 over-expressed in 
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67: Hsieh CH, Pei D, Hung YJ, Kuo SW, He CT, Lee CH, Wu CZ. Identifying subjects 
with insulin resistance by using the modified criteria of metabolic syndrome. J
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68: Wu CZ, Lin JD, Li JC, Hsiao FC, Hsieh CH, Kuo SW, Hung YJ, Lu CH, He CT, Pei 
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69: Pei DS, Song YJ, Yu HM, Hu WW, Du Y, Zhang GY. Exogenous nitric oxide
negatively regulates c-Jun N-terminal kinase activation via inhibiting endogenous
NO-induced S-nitrosylation during cerebral ischemia and reperfusion in rat
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70: Yang J, Bogni A, Cheng C, Bleibel WK, Cai X, Fan Y, Yang W, Rocha JC, Pei D, 
Liu W, Dolan ME, Pui CH, Relling MV. Etoposide sensitivity does not predict MLL
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71: Chen W, Wang X, Tu X, Pei D, Zhao Y, Guo X. Water-soluble off-on spin-labeled
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72: Peng JS, Zhou DJ, Pei DE, Zhou Y, Liu MQ, Tang L, Xu J, Wu XW, Huo WZ, Zhou
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73: Nguyen KT, Pei D. High-throughput screening of peptide deformylase
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74: Yang L, Panetta JC, Cai X, Yang W, Pei D, Cheng C, Kornegay N, Pui CH,
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75: Sorich MJ, Pottier N, Pei D, Yang W, Kager L, Stocco G, Cheng C, Panetta JC, 
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76: Deng Y, Wang Y, Holtz B, Li J, Traaseth N, Veglia G, Stottrup BJ, Elde R, Pei
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77: Wnuk SF, Lalama J, Garmendia CA, Robert J, Zhu J, Pei D.
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78: Pei DS, Sun YH, Chen CH, Chen SP, Wang YP, Hu W, Zhu ZY. Identification and
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79: Zhang Y, Zhou S, Wavreille AS, DeWille J, Pei D. Cyclic peptidyl inhibitors
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80: Pei D. The magic continues for the iPS strategy. Cell Res. 2008
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81: Liu T, Joo SH, Voorhees JL, Brooks CL, Pei D. Synthesis and screening of a
cyclic peptide library: discovery of small-molecule ligands against human
prolactin receptor. Bioorg Med Chem. 2009 Feb 1;17(3):1026-33. Epub 2008 Jan 13. 
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82: Joo SH, Pei D. Synthesis and screening of support-bound combinatorial peptide
libraries with free C-termini: determination of the sequence specificity of PDZ
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83: Zhu J, Pei D. A LuxP-based fluorescent sensor for bacterial autoinducer II.
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84: Hargrove PW, Kepes S, Hanawa H, Obenauer JC, Pei D, Cheng C, Gray JT, Neale
G, Persons DA. Globin lentiviral vector insertions can perturb the expression of 
endogenous genes in beta-thalassemic hematopoietic cells. Mol Ther. 2008
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85: Shen G, Zhu J, Simpson AM, Pei D. Design and synthesis of macrocyclic
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86: Wang Z, Ma T, Chi X, Pei D. Aromatic residues in the C-terminal domain 2 are 
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87: Hsieh CH, Pei D, Kuo SW, Chen CY, Tsai SL, Lai CL, Lee CH, Wu CZ, Hung YJ,
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88: Nguyen KT, Wu JC, Boylan JA, Gherardini FC, Pei D. Zinc is the metal cofactor
of Borrelia burgdorferi peptide deformylase. Arch Biochem Biophys. 2007 Dec
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89: Qin D, Li W, Zhang J, Pei D. Direct generation of ES-like cells from
unmodified mouse embryonic fibroblasts by Oct4/Sox2/Myc/Klf4. Cell Res. 2007
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90: Pei D, Lin JD, Wu DA, Hsieh CH, Hung YJ, Kuo SW, Kuo KL, Wu CZ, Li JC.
Predicting glucose intolerance with normal fasting plasma glucose by the
components of the metabolic syndrome. Ann Saudi Med. 2007 Sep-Oct;27(5):339-46.
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91: Pei DS, Sun YH, Chen SP, Wang YP, Hu W, Zhu ZY. Identification of
differentially expressed genes from the cross-subfamily cloned embryos derived
from zebrafish nuclei and rare minnow enucleated eggs. Theriogenology. 2007
Dec;68(9):1282-91. Epub 2007 Oct 4. PubMed PMID: 17919716.

92: Zong XM, Sun YF, Pei DS, Zeng YM, Xu T. Pergolide protects CA1 neurons from
apoptosis in a gerbil model of global cerebral ischemia. Neurol Res. 2008
Feb;30(1):92-8. PubMed PMID: 17767807.

93: Hung YJ, Hsieh CH, Chen YJ, Pei D, Kuo SW, Shen DC, Sheu WH, Chen YC. Insulin
sensitivity, proinflammatory markers and adiponectin in young males with
different subtypes of depressive disorder. Clin Endocrinol (Oxf). 2007
Nov;67(5):784-9. Epub 2007 Aug 13. PubMed PMID: 17697007.

94: Lin JD, Wan HL, Li JC, Wu CZ, Kuo SW, Hsieh CH, Lian WC, Lee CH, Kao MT, Pei 
D. Impaired glucose tolerance and impaired fasting glucose share similar
underlying pathophysiologies. Tohoku J Exp Med. 2007 Aug;212(4):349-57. PubMed
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95: Jiang HX, Guan QH, Pei DS, Zhang GY. Functional cooperation between KA2 and
GluR6 subunits is involved in the ischemic brain injury. J Neurosci Res. 2007
Oct;85(13):2960-70. PubMed PMID: 17639597.

96: Pei D, Wavreille AS. Reverse interactomics: decoding protein-protein
interactions with combinatorial peptide libraries. Mol Biosyst. 2007
Aug;3(8):536-41. Epub 2007 Jun 18. PubMed PMID: 17639128.

97: Qi H, Pei D. The magic of four: induction of pluripotent stem cells from
somatic cells by Oct4, Sox2, Myc and Klf4. Cell Res. 2007 Jul;17(7):578-80.
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98: Pei DA, Li L, Xu ZY, Zou LJ, Zhang BR, Huang SD, Hao JH, Wang ZN, Lu FL.
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25 cases]. Zhonghua Yi Xue Za Zhi. 2007 Mar 27;87(12):816-9. Chinese. PubMed
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99: Wang XT, Pei DS, Xu J, Guan QH, Sun YF, Liu XM, Zhang GY. Opposing effects of
Bad phosphorylation at two distinct sites by Akt1 and JNK1/2 on ischemic brain
injury. Cell Signal. 2007 Sep;19(9):1844-56. Epub 2007 Apr 27. PubMed PMID:
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100: Xiao Q, Pei D. High-throughput synthesis and screening of cyclic peptide
antibiotics. J Med Chem. 2007 Jun 28;50(13):3132-7. Epub 2007 Jun 5. PubMed PMID:
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101: Wavreille AS, Garaud M, Zhang Y, Pei D. Defining SH2 domain and PTP
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Jul;42(3):207-19. PubMed PMID: 17532507; PubMed Central PMCID: PMC2041848.

102: Li J, Pan G, Cui K, Liu Y, Xu S, Pei D. A dominant-negative form of mouse
SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse
embryonic stem cells. J Biol Chem. 2007 Jul 6;282(27):19481-92. Epub 2007 May 15.
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103: Wang Y, Ji HX, Xing SH, Pei DS, Guan QH. SP600125, a selective JNK
inhibitor, protects ischemic renal injury via suppressing the extrinsic pathways 
of apoptosis. Life Sci. 2007 May 8;80(22):2067-75. Epub 2007 Mar 27. PubMed PMID:
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104: Flotho C, Coustan-Smith E, Pei D, Cheng C, Song G, Pui CH, Downing JR,
Campana D. A set of genes that regulate cell proliferation predicts treatment
outcome in childhood acute lymphoblastic leukemia. Blood. 2007 Aug
15;110(4):1271-7. Epub 2007 Apr 24. PubMed PMID: 17456722; PubMed Central PMCID: 
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105: Garaud M, Pei D. Substrate profiling of protein tyrosine phosphatase PTP1B
by screening a combinatorial peptide library. J Am Chem Soc. 2007 May
2;129(17):5366-7. Epub 2007 Apr 7. PubMed PMID: 17417856.

106: Hou J, Liu X, Pei D, Liu J. RNase HII from Chlamydia pneumoniae
discriminates mismatches incorporation into DNA-rN1-DNA/DNA duplexes. Biochem
Biophys Res Commun. 2007 May 18;356(4):988-92. Epub 2007 Mar 22. PubMed PMID:
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107: Rajamani S, Zhu J, Pei D, Sayre R. A LuxP-FRET-based reporter for the
detection and quantification of AI-2 bacterial quorum-sensing signal compounds.
Biochemistry. 2007 Apr 3;46(13):3990-7. Epub 2007 Mar 13. PubMed PMID: 17352493.

108: Zhang QX, Pei DS, Guan QH, Sun YF, Liu XM, Zhang GY. Crosstalk between
PSD-95 and JIP1-mediated signaling modules: the mechanism of MLK3 activation in
cerebral ischemia. Biochemistry. 2007 Apr 3;46(13):4006-16. Epub 2007 Mar 10.
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109: Minond D, Lauer-Fields JL, Cudic M, Overall CM, Pei D, Brew K, Moss ML,
Fields GB. Differentiation of secreted and membrane-type matrix metalloproteinase
activities based on substitutions and interruptions of triple-helical sequences. 
Biochemistry. 2007 Mar 27;46(12):3724-33. Epub 2007 Mar 6. PubMed PMID: 17338550;
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110: Liang R, Liu X, Pei D, Liu J. Biochemical characterization and functional
complementation of ribonuclease HII and ribonuclease HIII from Chlamydophila
pneumoniae AR39. Microbiology. 2007 Mar;153(Pt 3):787-93. PubMed PMID: 17322199.

111: Ge YH, Pei DL, Zhao YH, Li WW, Wang SF, Xu YQ. Correlation between
antifungal agent phenazine-1-carboxylic acid and pyoluteorin biosynthesis in
Pseudomonas sp. M18. Curr Microbiol. 2007 Apr;54(4):277-81. Epub 2007 Feb 16.
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112: Pei DS, Sun YH, Long Y, Zhu ZY. Inhibition of no tail (ntl) gene expression 
in zebrafish by external guide sequence (EGS) technique. Mol Biol Rep. 2008
Jun;35(2):139-43. Epub 2007 Feb 9. PubMed PMID: 17294249.

113: Kishi S, Cheng C, French D, Pei D, Das S, Cook EH, Hijiya N, Rizzari C,
Rosner GL, Frudakis T, Pui CH, Evans WE, Relling MV. Ancestry and
pharmacogenetics of antileukemic drug toxicity. Blood. 2007 May
15;109(10):4151-7. Epub 2007 Jan 30. PubMed PMID: 17264302; PubMed Central PMCID:
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114: Pei DS, Sun YH, Chen SP, Wang YP, Hu W, Zhu ZY. Zebrafish GAPDH can be used 
as a reference gene for expression analysis in cross-subfamily cloned embryos.
Anal Biochem. 2007 Apr 15;363(2):291-3. Epub 2006 Dec 29. PubMed PMID: 17239340.

115: Pei DS, Sun YH, Zhu ZY. Construction of cytoplasmic molecular markers
distinguishing Danio rerio from Gobiocypris rarus at high identity domains based 
on MP-PCR strategy and Sybr Green I detection. Mol Biol Rep. 2008
Mar;35(1):45-50. Epub 2007 Jan 9. PubMed PMID: 17211516.

116: Zhao J, Pei DS, Zhang QG, Zhang GY. Down-regulation Cdc42 attenuates
neuronal apoptosis through inhibiting MLK3/JNK3 cascade during ischemic
reperfusion in rat hippocampus. Cell Signal. 2007 Apr;19(4):831-43. Epub 2006 Dec
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117: Nie J, Pei J, Blumenthal M, Pei D. Complete restoration of cell surface
activity of transmembrane-truncated MT1-MMP by a glycosylphosphatidylinositol
anchor. Implications for MT1-MMP-mediated prommp2 activation and collagenolysis
in three-dimensions. J Biol Chem. 2007 Mar 2;282(9):6438-43. Epub 2006 Dec 11.
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