TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|67465527|sp|P0A6Y5.1|HSLO_ECOLI RecName: Full=33 kDa
chaperonin; AltName: Full=Heat shock protein 33; Short=HSP33
         (292 letters)

Database: all 
           884 sequences; 12,243,887 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008860 AE006468 |AE008860| Salmonella typhimurium LT2, section...   496   e-141
embl|AE006191|AE006191 Pasteurella multocida subsp. multocida st...   271   1e-73
AE012399 AE008922 |AE012399| Xanthomonas campestris pv. campestr...   136   6e-33

>AE008860 AE006468 |AE008860| Salmonella typhimurium LT2, section 164 of
             220 of the complete genome.
          Length = 21321

 Score =  496 bits (1277), Expect = e-141
 Identities = 242/292 (82%), Positives = 255/292 (87%)
 Frame = +3

Query: 1     MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVXXXXXXXXXXXXXXXK 60
             MPQHDQLHRYLFENFAVRGELVTVSETLQQIL+NH+YPQPVK V               K
Sbjct: 18426 MPQHDQLHRYLFENFAVRGELVTVSETLQQILDNHNYPQPVKTVLAELLVATSLLTATLK 18605

Query: 61    FDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITITPS 120
             F GDITVQLQGDGP++LAVINGNN QQMRGVARVQG+IP+NADLKTLVGNGY+VITITP 
Sbjct: 18606 FAGDITVQLQGDGPLSLAVINGNNQQQMRGVARVQGDIPDNADLKTLVGNGYLVITITPE 18785

Query: 121   EGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA 180
             EGERYQGVVGLEGDTLAACLEDYF+RSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA
Sbjct: 18786 EGERYQGVVGLEGDTLAACLEDYFLRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA 18965

Query: 181   QQDDFDHXXXXXXXXXXXXXXXXPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADA 240
             Q +DFDH                PAN+VLWRLYHEEEVT+YDPQ+VEFKCTCSRERCA A
Sbjct: 18966 QAEDFDHLAMLTETIKSEELLTLPANDVLWRLYHEEEVTLYDPQNVEFKCTCSRERCAGA 19145

Query: 241   LKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH 292
             LKTLPDEEVDSILAE+GEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH
Sbjct: 19146 LKTLPDEEVDSILAEEGEIDMHCDYCGNHYLFNAMDIAEIRNNASPADPQVH 19301


>embl|AE006191|AE006191 Pasteurella multocida subsp. multocida str.
            Pm70 section 158 of 204 of the complete genome.
          Length = 11477

 Score =  271 bits (694), Expect = 1e-73
 Identities = 130/279 (46%), Positives = 183/279 (65%), Gaps = 1/279 (0%)
 Frame = +1

Query: 4    HDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVXXXXXXXXXXXXXXXKFDG 63
            +D+L+RYLF++ AVRGE V +++T    L  H YP+ ++N+               KF+G
Sbjct: 7981 NDKLYRYLFQDRAVRGEWVRLNQTFTDTLNTHQYPKVIQNLLGEMMVATSLLTATLKFEG 8160

Query: 64   DITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITITPSEGE 123
            DITVQ+QGDGP+ LA++NGN+ QQ+R +AR+Q ++ ++  L  LVG G +VITI P+EGE
Sbjct: 8161 DITVQVQGDGPLKLALVNGNHQQQIRALARLQADVSDDMSLAQLVGKGVLVITIAPTEGE 8340

Query: 124  RYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNAQQD 183
            RYQGV+ L+  T+ ACLEDYF+RSEQL T+L IR G+ +G+P A GMLLQ+MP  +   +
Sbjct: 8341 RYQGVIALDKPTITACLEDYFVRSEQLQTQLIIRAGEFEGQPVAAGMLLQIMPDGSGSPE 8520

Query: 184  DFDHXXXXXXXXXXXXXXXXPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKT 243
            DF+H                 A E+L+RLYHEE V ++  Q + F C CS+ER   AL  
Sbjct: 8521 DFEHLATLAATVKEEELFGLTAEELLYRLYHEERVEIFPSQPISFFCGCSQERSGAALLL 8700

Query: 244  LPDEEVDSILAE-DGEIDMHCDYCGNHYLFNAMDIAEIR 281
            + DEE+D +LAE +G IDM C+ CG HY FN   I +++
Sbjct: 8701 ISDEELDEVLAEHNGTIDMQCECCGTHYFFNKAAIMQLK 8817


>AE012399 AE008922 |AE012399| Xanthomonas campestris pv. campestris
            str. ATCC 33913,  section 307 of 460 of the complete
            genome.
          Length = 12752

 Score =  136 bits (343), Expect = 6e-33
 Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 5/292 (1%)
 Frame = +3

Query: 1    MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNVXXXXXXXXXXXXXXXK 60
            M  HDQL R+L     VRG  V +++  + I     YP   + +               K
Sbjct: 7782 MTDHDQLSRFLLPAAGVRGVHVRLTQAWRDIQGAAHYPPFARQLLGEAAVASALFTGHTK 7961

Query: 61   FDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENADLKTLVGNGYVVITIT-- 118
             DG ++VQL+G+  +            +RG+ ++        DL+ L  +  + ITI   
Sbjct: 7962 VDGRLSVQLRGNDRLRTLFAECTAAGTLRGIVQIADGADAPTDLRELGDDALLAITIENP 8141

Query: 119  ---PSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVM 175
               P E +RYQ +VG++   LA   E YF++SEQLPTRL +  G       A G+LLQ +
Sbjct: 8142 GLDPREPQRYQSLVGMQAPDLAEAFETYFLQSEQLPTRLLLAAGP----DQAAGLLLQKL 8309

Query: 176  PAQNAQQDDFDHXXXXXXXXXXXXXXXXPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRE 235
            P      D +                     ++L RL+HEE   +   + + F C+CSRE
Sbjct: 8310 PGDEGDTDGWTRVGALFDTLGAPELLSVAGEDLLHRLFHEEAPELVGNKALSFGCSCSRE 8489

Query: 236  RCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNASPA 287
            R A  L++L ++E  +     GE+++ C++CG  Y F   ++  + + A P+
Sbjct: 8490 RVAAMLQSLGEDEARAAAEPTGEVEVRCEFCGREYHFPLTELDVLFSEAQPS 8645


  Database: all
    Posted date:  Dec 28, 2008 10:53 AM
  Number of letters in database: 12,243,887
  Number of sequences in database:  884
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 3,788,557
Number of extensions: 51315
Number of successful extensions: 242
Number of sequences better than 1.0e-03: 3
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 4,081,295
Length adjustment: 93
Effective length of query: 199
Effective length of database: 3,999,083
Effective search space: 795817517
Effective search space used: 795817517
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)