BLASTN 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= X00210 X00210.1 E. coli K12 DNA argI gene encoding ornithine transcarbamoylase (OTCase-1, EC 2.1.3.3). (1005 letters) Database: xc 460 sequences; 5,103,728 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE012538 AE008922 Xanthomonas campestris pv. campestris str. ATC... 32 1.0 AE012515 AE008922 Xanthomonas campestris pv. campestris str. ATC... 32 1.0 AE012552 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012539 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012500 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012485 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012473 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012442 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012403 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012336 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012242 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012228 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012222 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012166 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012133 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012109 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 AE012094 AE008922 Xanthomonas campestris pv. campestris str. ATC... 30 4.0 >AE012538 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 446 of 460 of the complete genome. Length = 10676 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%) Strand = Plus / Plus Query: 280 gcccgcgtgcttggtc 295 |||||||||||||||| Sbjct: 6703 gcccgcgtgcttggtc 6718 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 388 accaatgagttccat 402 ||||||||||||||| Sbjct: 4244 accaatgagttccat 4258 >AE012515 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 423 of 460 of the complete genome. Length = 10679 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%) Strand = Plus / Plus Query: 665 gagttgaaggtgctga 680 |||||||||||||||| Sbjct: 5079 gagttgaaggtgctga 5094 >AE012552 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 460 of 460 of the complete genome. Length = 6799 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 774 caagatgatgcagtt 788 ||||||||||||||| Sbjct: 4406 caagatgatgcagtt 4392 >AE012539 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 447 of 460 of the complete genome. Length = 10175 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 484 gcaggtgacgcgcgt 498 ||||||||||||||| Sbjct: 10110 gcaggtgacgcgcgt 10124 >AE012500 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 408 of 460 of the complete genome. Length = 10116 Score = 30.2 bits (15), Expect = 4.0 Identities = 18/19 (94%) Strand = Plus / Plus Query: 518 tgctcgaagctgcggcgct 536 ||||| ||||||||||||| Sbjct: 3371 tgctctaagctgcggcgct 3389 >AE012485 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 393 of 460 of the complete genome. Length = 12189 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 745 gcattgctggctgaa 759 ||||||||||||||| Sbjct: 8220 gcattgctggctgaa 8234 >AE012473 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 381 of 460 of the complete genome. Length = 11134 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 58 ctcaacagcctgctg 72 ||||||||||||||| Sbjct: 5840 ctcaacagcctgctg 5854 >AE012442 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 350 of 460 of the complete genome. Length = 11653 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 507 gggcaattcgatgct 521 ||||||||||||||| Sbjct: 150 gggcaattcgatgct 136 >AE012403 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 311 of 460 of the complete genome. Length = 10787 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 501 caacatgggcaattc 515 ||||||||||||||| Sbjct: 7138 caacatgggcaattc 7124 >AE012336 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 244 of 460 of the complete genome. Length = 10286 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 976 gcggtgatggtcgcg 990 ||||||||||||||| Sbjct: 1527 gcggtgatggtcgcg 1513 >AE012242 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 150 of 460 of the complete genome. Length = 10405 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 449 ccggcaaagcgttca 463 ||||||||||||||| Sbjct: 3534 ccggcaaagcgttca 3520 >AE012228 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 136 of 460 of the complete genome. Length = 11820 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 776 agatgatgcagttga 790 ||||||||||||||| Sbjct: 11373 agatgatgcagttga 11387 >AE012222 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 130 of 460 of the complete genome. Length = 11629 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 570 agcgtgctggccgga 584 ||||||||||||||| Sbjct: 600 agcgtgctggccgga 586 >AE012166 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 74 of 460 of the complete genome. Length = 13138 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 610 gccctggcacagcaa 624 ||||||||||||||| Sbjct: 5026 gccctggcacagcaa 5012 >AE012133 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 41 of 460 of the complete genome. Length = 10617 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 484 gcaggtgacgcgcgt 498 ||||||||||||||| Sbjct: 8352 gcaggtgacgcgcgt 8366 >AE012109 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 17 of 460 of the complete genome. Length = 11866 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 568 caagcgtgctggccg 582 ||||||||||||||| Sbjct: 5548 caagcgtgctggccg 5562 >AE012094 AE008922 Xanthomonas campestris pv. campestris str. ATCC 33913, section 2 of 460 of the complete genome. Length = 10542 Score = 30.2 bits (15), Expect = 4.0 Identities = 18/19 (94%) Strand = Plus / Minus Query: 396 gttccatcccacgcagctg 414 |||||||||||| |||||| Sbjct: 5633 gttccatcccacccagctg 5615 Database: xc Posted date: Nov 4, 2009 3:14 PM Number of letters in database: 5,103,728 Number of sequences in database: 460 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 460 Number of Hits to DB: 63,129 Number of extensions: 18 Number of successful extensions: 18 Number of sequences better than 10.0: 17 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 1005 Length of database: 5,103,728 Length adjustment: 16 Effective length of query: 989 Effective length of database: 5,096,368 Effective search space: 5040307952 Effective search space used: 5040307952 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 50 (99.1 bits) S1: 15 (30.2 bits) S2: 15 (30.2 bits)