TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= b0215 name description (243 letters) Database: pa 529 sequences; 6,296,083 total letters Searching..done Score E Sequences producing significant alignments: (bits) Value embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 ... 246 2e-66 embl|AE004560|AE004560 Pseudomonas aeruginosa PAO1, section 121 ... 38 0.001 embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 ... 30 0.43 embl|AE004828|AE004828 Pseudomonas aeruginosa PAO1, section 389 ... 29 0.73 embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 ... 27 3.6 embl|AE004862|AE004862 Pseudomonas aeruginosa PAO1, section 423 ... 26 6.2 embl|AE004731|AE004731 Pseudomonas aeruginosa PAO1, section 292 ... 26 6.2 embl|AE004753|AE004753 Pseudomonas aeruginosa PAO1, section 314 ... 25 8.0 embl|AE004728|AE004728 Pseudomonas aeruginosa PAO1, section 289 ... 25 8.0 embl|AE004600|AE004600 Pseudomonas aeruginosa PAO1, section 161 ... 25 8.0 embl|AE004451|AE004451 Pseudomonas aeruginosa PAO1, section 12 o... 25 8.0 >embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 of 529 of the complete genome. Length = 13121 Score = 246 bits (628), Expect = 2e-66 Identities = 132/240 (55%), Positives = 170/240 (70%), Gaps = 5/240 (2%) Frame = +3 Query: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66 R +VLDTETTGM +GH+IIEIG VE+ RRLTG +FHVYL+PDR VD A VH Sbjct: 2226 RSVVLDTETTGMPVT----DGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVH 2393 Query: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLL-KRDIPKTNTFC 125 GI +E+L DKP F EVA++F ++IRGA+L+IHNAAFDIGF++ EF+LL ++D +C Sbjct: 2394 GITNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 2573 Query: 126 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185 V D+L +AR+ PG+RN+LDALC RY +DNS R LHGALLDA+ILA+VYLAMTGGQTS+ Sbjct: 2574 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 2753 Query: 186 AFAMEGETXXXXGE---ATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKK-GGSCLW 241 + A G G + I+R+ V+ A EE+AAH ARL +++K GG LW Sbjct: 2754 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 2933 >embl|AE004560|AE004560 Pseudomonas aeruginosa PAO1, section 121 of 529 of the complete genome. Length = 11168 Score = 38.1 bits (87), Expect = 0.001 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = +2 Query: 141 KRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETXXXXG 198 + ++LDAL AR+ D S T HG +LD L E++ + G + + ++GE+ G Sbjct: 10124 RADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASG 10297 >embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 of 529 of the complete genome. Length = 10822 Score = 29.6 bits (65), Expect = 0.43 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%) Frame = +3 Query: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRL----VDP-EAF 63 +V+D ET G N ++EI A V G + +L P+ ++P E Sbjct: 4266 VVVDVETGGFNSAT-----DALLEIAATTV------GMDEKGFLFPEHTYFFRIEPFEGA 4412 Query: 64 GVHGIADEFL---LDKPTFAEVADE--FMDYIRG------------AELVIHNAAFDIGF 106 + A EF LD P V +E + RG A LV HN++FD+GF Sbjct: 4413 NIEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGF 4592 Query: 107 MDYEFSLLKRDIPKTNTFCKVT--DSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGA 164 ++ + + R K N F + D+ +A + + A E DN R H A Sbjct: 4593 LN---AAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDN--REAHSA 4757 Query: 165 LLDAQILAEVYLAMTGGQTSMAFAMEGE 192 D + AE++ + M M+ + Sbjct: 4758 RYDTEKTAELFCGIVNRWKEMGGWMDDD 4841 >embl|AE004828|AE004828 Pseudomonas aeruginosa PAO1, section 389 of 529 of the complete genome. Length = 12433 Score = 28.9 bits (63), Expect = 0.73 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 31 IEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG 64 +E+G E +RRL V+L P RL DP G Sbjct: 11651 LEVGVFEDQHRRLAAQFHRVFLDPGRLHDPSPGG 11550 >embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 of 529 of the complete genome. Length = 12469 Score = 26.6 bits (57), Expect = 3.6 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = -3 Query: 147 ALCARYEI------DNSKRTLHGALLDAQILAEVY 175 ALC R+ I D+ KR L ALL A ++AEV+ Sbjct: 12452 ALCGRFSICQLEKKDSMKRFLLPALLSALMIAEVH 12348 >embl|AE004862|AE004862 Pseudomonas aeruginosa PAO1, section 423 of 529 of the complete genome. Length = 17589 Score = 25.8 bits (55), Expect = 6.2 Identities = 30/117 (25%), Positives = 46/117 (39%) Frame = +2 Query: 73 LLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLA 132 +L + T AE+A D AE + I +D P+ N+F +TD LA Sbjct: 3221 MLHQLTLAEIARALADKQFSAEELTRTLLGRIRQLD----------PQLNSFISITDDLA 3370 Query: 133 VARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAM 189 +A+ +R + N + +GALL A I + G +TS M Sbjct: 3371 IAQAKAADERRA-----------NGE---NGALLGAPIAHKDLFCTQGVRTSCGSKM 3499 Score = 25.4 bits (54), Expect = 8.0 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Frame = -3 Query: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYL-------KPDRLVDPEAF 63 LDT +++ G H + + E+G V ++ GN V L + R D F Sbjct: 4576 LDTHRQAVDEAGGHGQPRQAGEVGGDGVDVFQVLGNRVVVLLADLPGRVRRGRAEDHVHF 4397 Query: 64 GVHGIADEFLLDKP 77 G ADE +LD+P Sbjct: 4396 GKG--ADEVVLDQP 4361 >embl|AE004731|AE004731 Pseudomonas aeruginosa PAO1, section 292 of 529 of the complete genome. Length = 18765 Score = 25.8 bits (55), Expect = 6.2 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -3 Query: 79 FAEVADEFMDYIRGAELVI 97 F EVA+EF+D + A+LV+ Sbjct: 11521 FDEVAEEFLDQFQAADLVV 11465 >embl|AE004753|AE004753 Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete genome. Length = 16268 Score = 25.4 bits (54), Expect = 8.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 218 TDEEIAAHEARLDLVQKKGGSCLW 241 +D++ HE LD++Q+ G LW Sbjct: 8476 SDKKAKTHEGLLDILQRAGVQVLW 8405 >embl|AE004728|AE004728 Pseudomonas aeruginosa PAO1, section 289 of 529 of the complete genome. Length = 10982 Score = 25.4 bits (54), Expect = 8.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 Query: 219 DEEIAAHEARLDLVQKKGGSCLW 241 D ++ HE R LV G CLW Sbjct: 2885 DGDVQRHECRFGLVAHGVGPCLW 2953 >embl|AE004600|AE004600 Pseudomonas aeruginosa PAO1, section 161 of 529 of the complete genome. Length = 10314 Score = 25.4 bits (54), Expect = 8.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -1 Query: 111 FSLLKRDIPKTNTFCKVTDSLAVARKMFPG---KRNSLDALCA 150 F L + DIPK T+ + L VAR +P R +D L A Sbjct: 9177 FLLPRADIPKAETYRQAYAELPVARSGYPSFERARQVVDRLLA 9049 >embl|AE004451|AE004451 Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome. Length = 10700 Score = 25.4 bits (54), Expect = 8.0 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = -3 Query: 54 PDRLVDPEAFGVH--GIADEFLLDKPTFAEVAD 84 P P A G+ G A+ F DKPT A VAD Sbjct: 6201 PSNAFPPTAEGIFSTGNANSFSTDKPTEAPVAD 6103 Database: pa Posted date: Sep 29, 2006 7:57 PM Number of letters in database: 6,296,083 Number of sequences in database: 529 Lambda K H 0.322 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,518,527 Number of Sequences: 529 Number of extensions: 19188 Number of successful extensions: 105 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 48 length of query: 243 length of database: 2,098,694 effective HSP length: 86 effective length of query: 157 effective length of database: 2,053,200 effective search space: 322352400 effective search space used: 322352400 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.0 bits)