TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= uniprot|P0A850|TIG_ECOLI Trigger factor (TF). (432 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008716 AE006468 |AE008716| Salmonella typhimurium LT2, section... 741 0.0 embl|AE006234|AE006234 Pasteurella multocida subsp. multocida st... 511 e-145 AE012195 AE008922 |AE012195| Xanthomonas campestris pv. campestr... 226 1e-59 AE012370 AE008922 |AE012370| Xanthomonas campestris pv. campestr... 39 0.004 AE008858 AE006468 |AE008858| Salmonella typhimurium LT2, section... 35 0.042 AE012489 AE008922 |AE012489| Xanthomonas campestris pv. campestr... 30 1.8 AE012103 AE008922 |AE012103| Xanthomonas campestris pv. campestr... 28 6.7 embl|AE006040|AE006040 Pasteurella multocida subsp. multocida st... 28 6.7 AE012436 AE008922 |AE012436| Xanthomonas campestris pv. campestr... 27 8.8 >AE008716 AE006468 |AE008716| Salmonella typhimurium LT2, section 24 of 220 of the complete genome. Length = 22364 Score = 741 bits (1912), Expect = 0.0 Identities = 383/432 (88%), Positives = 393/432 (90%) Frame = +1 Query: 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA 60 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA Sbjct: 9820 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA 9999 Query: 61 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGL 120 SVRQDVLGDLMSRNF+DAIIKEKINPAGAP YVPGEYK+GEDFTYSVEFEVYPEVEL GL Sbjct: 10000 SVRQDVLGDLMSRNFVDAIIKEKINPAGAPNYVPGEYKVGEDFTYSVEFEVYPEVELTGL 10179 Query: 121 EAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGG 180 E+IEVEKP+VEVTDADVD MLDTLRKQQATWKEKDGA +AEDRVTIDFTGSVDGEEFEGG Sbjct: 10180 ESIEVEKPVVEVTDADVDVMLDTLRKQQATWKEKDGAADAEDRVTIDFTGSVDGEEFEGG 10359 Query: 181 KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKV 240 KA+DFVLAMGQGRMIPGFEDG+KGHKAGEEFTIDVTFPEEYHAENLKGKAAKF INLKKV Sbjct: 10360 KATDFVLAMGQGRMIPGFEDGVKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKV 10539 Query: 241 EERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDI 300 EERELPELT EFIKRFGVEDGSV GLRAEVRKNMERELK A+RNRVKSQAIEGLVKANDI Sbjct: 10540 EERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANDI 10719 Query: 301 DVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKXXXXXXXXXXEVIRTNEL 360 DVP+ALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAK EVIRTNEL Sbjct: 10720 DVPSALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNEL 10899 Query: 361 KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNXXXXXXXXXXXXXXXXXXXX 420 KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRN Sbjct: 10900 KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVSEK 11079 Query: 421 XTTFNELMNQQA 432 T+FNELMNQQA Sbjct: 11080 ATSFNELMNQQA 11115 >embl|AE006234|AE006234 Pasteurella multocida subsp. multocida str. Pm70 section 201 of 204 of the complete genome. Length = 14505 Score = 511 bits (1317), Expect = e-145 Identities = 255/432 (59%), Positives = 322/432 (74%) Frame = +2 Query: 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA 60 M ++ETTQGL RRV IT+ AD++E AV+ EL VAK R+DGFRKGKVP +I+ +R+GA Sbjct: 137 MSFTIETTQGLERRVQITVPADTVEGAVREELKRVAKTARVDGFRKGKVPPHIIEKRFGA 316 Query: 61 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGL 120 SVR DVLGD++ +F + ++++K+N AG P + +++ G+D ++ FEVYPEV LQGL Sbjct: 317 SVRHDVLGDVLQSHFFNVVMEQKVNLAGRPAFAVEQFEAGKDLVFTATFEVYPEVALQGL 496 Query: 121 EAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGG 180 + I+VEKP+VE+++AD+D M+D LRKQQATW E A AEDRV IDF GSVDGE FEGG Sbjct: 497 DQIKVEKPVVEISEADIDKMIDVLRKQQATWAETAEAASAEDRVVIDFVGSVDGEVFEGG 676 Query: 181 KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKV 240 KA DF L MGQGRMIPGFE+GI GHKAGE+F IDVTFPEEYHAENLKGKAAKFAI LKKV Sbjct: 677 KAEDFTLFMGQGRMIPGFEEGIVGHKAGEQFDIDVTFPEEYHAENLKGKAAKFAITLKKV 856 Query: 241 EERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDI 300 E LPELT EF+ +FG +V+ LR E+RKNM+RELK+A+ +VK Q I+GL+ N I Sbjct: 857 EVMVLPELTDEFVAKFGPNTKTVDDLRNEIRKNMQRELKNALTAKVKGQVIDGLLAQNAI 1036 Query: 301 DVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKXXXXXXXXXXEVIRTNEL 360 DVPA+ ++ EI+VLR QAAQRFGGN++QA +LPRELFEEQAK EVI ++EL Sbjct: 1037DVPASAVEQEIEVLRGQAAQRFGGNKEQAAQLPRELFEEQAKRRVQVGLLLAEVIASHEL 1216 Query: 361 KADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNXXXXXXXXXXXXXXXXXXXX 420 K DE R K +IEE+ASAYE P EV+E+YSKNKELM+N+RN Sbjct: 1217KVDEARAKTMIEEIASAYEQPAEVVEYYSKNKELMNNIRNVVLEEQAVDAVLAKAQVTEK 1396 Query: 421 XTTFNELMNQQA 432 +F+++MN QA Sbjct: 1397AASFDDVMNPQA 1432 >AE012195 AE008922 |AE012195| Xanthomonas campestris pv. campestris str. ATCC 33913, section 103 of 460 of the complete genome. Length = 10083 Score = 226 bits (576), Expect = 1e-59 Identities = 129/404 (31%), Positives = 206/404 (50%), Gaps = 4/404 (0%) Frame = +1 Query: 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA 60 MQ S+E+T L RR+T T+ + +ET V L +A+ RI GFR GKVP ++ QR+G Sbjct: 3079 MQASIESTGNLERRLTFTLPQERLETHVGGRLRELARTTRIKGFRPGKVPTKVIEQRFGQ 3258 Query: 61 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGL 120 VR + + L+ F A+ + + AG P GE DF + FEV P+ + Sbjct: 3259 QVRAEAMEGLLRETFDSAVREHSLRLAGNPRIDQGE----SDFDFVATFEVVPDFGDIDV 3426 Query: 121 EAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGG 180 + V + EVTDAD+D M++ LR Q+ TW + + D V ++ E Sbjct: 3427 TNLSVVRHTAEVTDADIDQMIENLRLQRRTWNPVERGAQVGDLVALETWSQAGNERLPAE 3606 Query: 181 KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKV 240 +G G M E G++G GE+ + + FP ++ L GK + + +V Sbjct: 3607 GVETGSSVLGSGVMFDQIEKGLEGLSKGEDKALSIDFPADWRVPQLAGKTVQVHVKAVEV 3786 Query: 241 EERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKA-ND 299 E LPE+ EFIK FGV+ G E RA++R N+ERELK A+ NR++ + E L+ A Sbjct: 3787 SEPVLPEVNKEFIKSFGVKSGDAEQFRADIRTNLERELKGALMNRLRREVGEQLIAAYAH 3966 Query: 300 IDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPREL---FEEQAKXXXXXXXXXXEVIR 356 +++P L+++E + Q + + + E+P + F + A EV R Sbjct: 3967 VEMPPRLVENEAGSMLAQQVDQMRRSGRNPGEIPADAHQGFMDAAAKRVLVGLLVGEVAR 4146 Query: 357 TNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRN 400 NEL+ + +RV + +AS YE+P++VIE Y + +LM +++ Sbjct: 4147 RNELRLESKRVSETLRLIASTYEEPEQVIEMYRNDPQLMSGLQS 4278 >AE012370 AE008922 |AE012370| Xanthomonas campestris pv. campestris str. ATCC 33913, section 278 of 460 of the complete genome. Length = 13098 Score = 38.5 bits (88), Expect = 0.004 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -3 Query: 158 VEAEDRVTIDFTGSVDGEE-FEGGKASD-FVLAMGQGRMIPGFEDGIKGHKAGEEFTIDV 215 +E + V +T S G+E E K D + +G G +IPG E + +AGE F +DV Sbjct: 5890 IEKDSVVRFHYTVSELGQEPIESSKERDPLAILIGHGNIIPGLEAAMMDKEAGESFGVDV 5711 Query: 216 TFPEEY--HAENLKGKAAK 232 E Y + E L + K Sbjct: 5710 KATEAYGEYREGLSQRVPK 5654 >AE008858 AE006468 |AE008858| Salmonella typhimurium LT2, section 162 of 220 of the complete genome. Length = 20646 Score = 35.0 bits (79), Expect = 0.042 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = -3 Query: 153 EKDGAVEA---EDRVTIDFTGS-VDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAG 208 EK+G EA D V +++ G+ +DG+EF+ L+ +IPG+ +G+K K G Sbjct: 13765 EKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKG 13586 Query: 209 EEFTIDVTFPEE 220 + I + P E Sbjct: 13585 GK--IKLVIPPE 13556 >AE012489 AE008922 |AE012489| Xanthomonas campestris pv. campestris str. ATCC 33913, section 397 of 460 of the complete genome. Length = 10504 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -2 Query: 358 NELKADEERVKGLIEEMASAYEDPKEVIEFY-SKNKEL 394 NEL+ ER++ +IEE+ S E+ K E Y S N+EL Sbjct: 8400 NELRITRERLQAMIEELESTNEELKSSNEEYQSLNEEL 8287 >AE012103 AE008922 |AE012103| Xanthomonas campestris pv. campestris str. ATCC 33913, section 11 of 460 of the complete genome. Length = 10696 Score = 27.7 bits (60), Expect = 6.7 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 42 DGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFI 76 +G+ G++PM+ R GAS RQD L L R F+ Sbjct: 7448 EGWHPGRLPMHA---RPGASARQDRLRRLQLRRFV 7353 >embl|AE006040|AE006040 Pasteurella multocida subsp. multocida str. Pm70 section 7 of 204 of the complete genome. Length = 10029 Score = 27.7 bits (60), Expect = 6.7 Identities = 21/66 (31%), Positives = 26/66 (39%) Frame = +2 Query: 315 RRQAAQRFGGNEKQALELPRELFEEQAKXXXXXXXXXXEVIRTNELKADEERVKGLIEEM 374 RR QRF + E LFEE+ E R N+ KA +ER + EE Sbjct: 4970 RRLNNQRFESLPRALQERLHHLFEEKRLAEDRKRQELLEKARLNKEKAQKERTEKFKEEE 5149 Query: 375 ASAYED 380 ED Sbjct: 5150 KRQEED 5167 >AE012436 AE008922 |AE012436| Xanthomonas campestris pv. campestris str. ATCC 33913, section 344 of 460 of the complete genome. Length = 11689 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 31 ELVNVAKKVRIDGF-RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFI 76 ELVN+A KV I+GF R G+ + Q + + + DL+ +++ Sbjct: 6147 ELVNMAIKVGINGFGRIGRNVLRSAVQNFANDIEIVAINDLLEPDYL 6007 Database: 3g Posted date: Dec 18, 2007 9:06 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.313 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 3,454,978 Number of extensions: 37201 Number of successful extensions: 178 Number of sequences better than 10.0: 9 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 9 Length of query: 432 Length of database: 4,081,295 Length adjustment: 96 Effective length of query: 336 Effective length of database: 3,996,431 Effective search space: 1342800816 Effective search space used: 1342800816 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.7 bits)