MEGABLAST 2.2.15 [Oct-15-2006]


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), 
"A greedy algorithm for aligning DNA sequences", 
J Comput Biol 2000; 7(1-2):203-14.

Database: Pm 
           173 sequences; 1,918,246 total letters

Searching..................................................done

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
         (76 letters)

 ***** No hits found ******


  Database: Pm
    Posted date:  Dec 27, 2007 11:53 PM
  Number of letters in database: 1,918,246
  Number of sequences in database:  173
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 173
Number of Hits to DB: 65
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 76
Length of database: 1,918,246
Length adjustment: 13
Effective length of query: 63
Effective length of database: 1,915,997
Effective search space: 120707811
Effective search space used: 120707811
Window for multiple hits: 40
X1: 11 (21.8 bits)
X2: 20 (39.6 bits)
X3: 51 (101.1 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)