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Blast 2 Sequences results
PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTN 2.2.15 [Oct-15-2006]

Match: Mismatch: gap open: gap extension:
x_dropoff: expect: wordsize: Filter View option    
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Sequence 1: gi|85674274|dbj|AP009048.1|Escherichia coli W3110 DNA, complete genome.
Length = 1281 (2791391 .. 2792671)

Sequence 2: gi|147900|gb|M88334.1|ECOSUSEDEHEscherichia coli succinic semialdehyde dehydrogenase (gabD), GABA transaminase (gabT), and GABA permease (gabP) genes, complete cds.
Length = 1281 (2100 .. 3380)





2 1

NOTE:Bitscore and expect value are calculated based on the size of the nr database.

NOTE:If protein translation is reversed, please repeat the search with reverse strand of the query sequence.





 Score = 2463 bits (1281),  Expect = 0.0
 Identities = 1281/1281 (100%), Gaps = 0/1281 (0%)
 Strand=Plus/Plus

Query  2791391  ATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGG  2791450
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2100     ATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGG  2159

Query  2791451  CAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGTGTGGGACGTTGAAGGC  2791510
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2160     CAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGTGTGGGACGTTGAAGGC  2219

Query  2791511  CGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCG  2791570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2220     CGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCG  2279

Query  2791571  AAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTG  2791630
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2280     AAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTG  2339

Query  2791631  CTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGAT  2791690
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2340     CTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGAT  2399

Query  2791691  TTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGTGGAAAACGCGGTAAAA  2791750
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2400     TTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGTGGAAAACGCGGTAAAA  2459

Query  2791751  ATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGG  2791810
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2460     ATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGG  2519

Query  2791811  CGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTACTCTGCGGGCATGGGG  2791870
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2520     CGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTACTCTGCGGGCATGGGG  2579

Query  2791871  CTGATGCCGGGTCATGTTTATCGCGCGCTTTATCCTTGCCCGCTGCACGGCATAAGCGAG  2791930
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2580     CTGATGCCGGGTCATGTTTATCGCGCGCTTTATCCTTGCCCGCTGCACGGCATAAGCGAG  2639

Query  2791931  GATGACGCTATCGCCAGCATCCACCGGATCTTCAAAAATGATGCCGCGCCGGAAGATATC  2791990
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2640     GATGACGCTATCGCCAGCATCCACCGGATCTTCAAAAATGATGCCGCGCCGGAAGATATC  2699

Query  2791991  GCCGCCATCGTGATTGAGCCGGTTCAGGGCGAAGGCGGTTTCTACGCCTCGTCGCCAGCC  2792050
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2700     GCCGCCATCGTGATTGAGCCGGTTCAGGGCGAAGGCGGTTTCTACGCCTCGTCGCCAGCC  2759

Query  2792051  TTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAA  2792110
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2760     TTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAA  2819

Query  2792111  GTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCAGATGGGCGTTGCG  2792170
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2820     GTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCAGATGGGCGTTGCG  2879

Query  2792171  CCGGATCTTACCACCTTTGCGAAATCGATCGCGGGCGGCTTCCCGCTGGCGGGCGTCACC  2792230
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2880     CCGGATCTTACCACCTTTGCGAAATCGATCGCGGGCGGCTTCCCGCTGGCGGGCGTCACC  2939

Query  2792231  GGGCGCGCGGAAGTAATGGATGCCGTCGCTCCAGGCGGTCTGGGCGGCACCTATGCGGGT  2792290
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2940     GGGCGCGCGGAAGTAATGGATGCCGTCGCTCCAGGCGGTCTGGGCGGCACCTATGCGGGT  2999

Query  2792291  AACCCGATTGCCTGCGTGGCTGCGCTGGAAGTGTTGAAGGTGTTTGAGCAGGAAAATCTG  2792350
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3000     AACCCGATTGCCTGCGTGGCTGCGCTGGAAGTGTTGAAGGTGTTTGAGCAGGAAAATCTG  3059

Query  2792351  CTGCAAAAAGCCAACGATCTGGGGCAGAAGTTGAAAGACGGATTGCTGGCGATAGCCGAA  2792410
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3060     CTGCAAAAAGCCAACGATCTGGGGCAGAAGTTGAAAGACGGATTGCTGGCGATAGCCGAA  3119

Query  2792411  AAACACCCGGAGATCGGCGACGTACGCGGGCTGGGGGCGATGATCGCCATTGAGCTGTTT  2792470
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3120     AAACACCCGGAGATCGGCGACGTACGCGGGCTGGGGGCGATGATCGCCATTGAGCTGTTT  3179

Query  2792471  GAAGACGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCC  2792530
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3180     GAAGACGGCGATCACAACAAGCCGGACGCCAAACTCACCGCCGAGATCGTGGCTCGCGCC  3239

Query  2792531  CGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTATTACAACGTGCTGCGCATCCTT  2792590
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3240     CGCGATAAAGGCCTGATTCTTCTCTCCTGCGGCCCGTATTACAACGTGCTGCGCATCCTT  3299

Query  2792591  GTACCGCTCACCATTGAAGACGCTCAGATCCGTCAGGGTCTGGAGATCATCAGCCAGTGT  2792650
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3300     GTACCGCTCACCATTGAAGACGCTCAGATCCGTCAGGGTCTGGAGATCATCAGCCAGTGT  3359

Query  2792651  TTTGATGAGGCGAAGCAGTAG  2792671
                |||||||||||||||||||||
Sbjct  3360     TTTGATGAGGCGAAGCAGTAG  3380



CPU time:     1.45 user secs.	    0.12 sys. secs	    1.57 total secs.

Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.33    0.621     1.12 


Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Number of Hits to DB: 358
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 1281
Length of database: 19,694,058,672
Length adjustment: 27
Effective length of query: 1254
Effective length of database: 19,694,058,645
Effective search space: 24696349540830
Effective search space used: 24696349540830
X1: 11 (21.1 bits)
X2: 15 (28.8 bits)
X3: 26 (50.0 bits)
S1: 13 (25.7 bits)
S2: 22 (43.0 bits)