TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|67469257|sp|P0A759.1|NAGB_ECOLI RecName: Full=Glucosamine-6-phosphate deaminase; AltName: Full=Glucosamine-6-phosphate isomerase; AltName: Full=GlcN6P deaminase; Short=GNPDA (266 letters) Database: pm 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008727 AE006468 |AE008727| Salmonella typhimurium LT2, section... 494 e-140 embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st... 403 e-113 embl|AE006192|AE006192 Pasteurella multocida subsp. multocida st... 51 3e-07 >AE008727 AE006468 |AE008727| Salmonella typhimurium LT2, section 35 of 220 of the complete genome. Length = 22671 Score = 494 bits (1272), Expect = e-140 Identities = 244/266 (91%), Positives = 250/266 (93%) Frame = -2 Query: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVXXXXXXXXXXXXYKALVEMHKAGQ 60 MRLIPL+TAEQVGKWAARHIVNRINAFKPTADRPFV YKALVEMHKAG+ Sbjct: 12266 MRLIPLSTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPLTAYKALVEMHKAGE 12087 Query: 61 VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 120 VSFKHVVTFNMDEYVGLPKEHPESY+SFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ Sbjct: 12086 VSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 11907 Query: 121 YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180 YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFD DVNQ Sbjct: 11906 YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDGDVNQ 11727 Query: 181 VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 240 VPKYALTVGVGTLLDAEEVMILVLG QKA ALQAAVEG VNHMWTISCLQLHPKA++VCD Sbjct: 11726 VPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEGNVNHMWTISCLQLHPKAVVVCD 11547 Query: 241 EPSTMELKVKTLRYFNELEAENIKGL 266 EPSTMELKVKTL+YFNELEAENIKGL Sbjct: 11546 EPSTMELKVKTLKYFNELEAENIKGL 11469 >embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str. Pm70 section 93 of 204 of the complete genome. Length = 12635 Score = 403 bits (1035), Expect = e-113 Identities = 193/266 (72%), Positives = 227/266 (85%) Frame = -2 Query: 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVXXXXXXXXXXXXYKALVEMHKAGQ 60 MRLIPL +QV KW+AR+IV+RIN F+PT RPFV Y+AL+E++KAG+ Sbjct: 3829 MRLIPLHNVDQVAKWSARYIVDRINQFQPTEARPFVLGLPTGGTPLKTYEALIELYKAGE 3650 Query: 61 VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 120 VSFKHVVTFNMDEYVGLPKEHPESY+SFM++NFFDHVDI +NIN+LNGN D DAEC++ Sbjct: 3649 VSFKHVVTFNMDEYVGLPKEHPESYHSFMYKNFFDHVDIQEKNINILNGNTEDHDAECQR 3470 Query: 121 YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180 YEEKI+SYGKIHLFMGGVG DGHIAFNEPASSL+SRTRIKTLT DT +ANSRFFDNDVN+ Sbjct: 3469 YEEKIKSYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIKTLTEDTLIANSRFFDNDVNK 3290 Query: 181 VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 240 VPKYALT+GVGTLLDAEEVMILV G KA ALQAAVEG +NH+WT++ LQ+H +AI+VCD Sbjct: 3289 VPKYALTIGVGTLLDAEEVMILVTGYNKAQALQAAVEGSINHLWTVTALQMHRRAIIVCD 3110 Query: 241 EPSTMELKVKTLRYFNELEAENIKGL 266 EP+T ELKVKT++YF ELEA I+ + Sbjct: 3109 EPATQELKVKTVKYFTELEASAIRSV 3032 >embl|AE006192|AE006192 Pasteurella multocida subsp. multocida str. Pm70 section 159 of 204 of the complete genome. Length = 10029 Score = 51.2 bits (121), Expect = 3e-07 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Frame = +1 Query: 77 LPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLF-- 134 +P PES Y + + FDH+ IPAENI+ + G AP +++E +++E+ + + +F Sbjct: 244 VPPTDPESNYGEVQKLLFDHIQIPAENIHRIRGEAP-VESELQRFEQALSAVIPGQVFDW 420 Query: 135 -MGGVGNDGHIA 145 + G+G DGH A Sbjct: 421 IILGMGTDGHTA 456 Database: pm Posted date: Oct 28, 2008 2:10 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.321 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 3,471,452 Number of extensions: 45605 Number of successful extensions: 200 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 3 Length of query: 266 Length of database: 4,081,295 Length adjustment: 92 Effective length of query: 174 Effective length of database: 3,999,967 Effective search space: 695994258 Effective search space used: 695994258 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 46 (22.3 bits)