1: Huang G, Srikantha T, Sahni N, Yi S, Soll DR.
 CO(2) Regulates White-to-Opaque Switching in Candida albicans.
Curr Biol. 2009 Feb 24;19(4):330-4. Epub 2009 Feb 5.
PMID: 19200725 [PubMed - in process]

2: Yi S, Sahni N, Pujol C, Daniels KJ, Srikantha T, Ma N, Soll DR.
 A Candida albicans-specific region of the alpha-pheromone receptor plays a
selective role in the white cell pheromone response.
Mol Microbiol. 2009 Feb;71(4):925-47. Epub 2008 Dec 18.
PMID: 19170873 [PubMed - in process]

3: Pujol C, Soll DR.
 DNA fingerprinting Candida species.
Methods Mol Biol. 2009;499:117-29.
PMID: 19152044 [PubMed - in process]

4: Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Soll 
D, Nureki O.
 Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of
orthogonality.
Nature. 2009 Feb 26;457(7233):1163-7. Epub 2008 Dec 31.
PMID: 19118381 [PubMed - in process]

5: Sahni N, Yi S, Pujol C, Soll DR.
 The white cell response to pheromone is a general characteristic of Candida
albicans strains.
Eukaryot Cell. 2009 Feb;8(2):251-6. Epub 2008 Dec 12.
PMID: 19074600 [PubMed - in process]

6: Srikantha T, Daniels KJ, Wu W, Lockhart SR, Yi S, Sahni N, Ma N, Soll DR.
 Dark brown is the more virulent of the switch phenotypes of Candida glabrata.
Microbiology. 2008 Nov;154(Pt 11):3309-18.
PMID: 18957584 [PubMed - indexed for MEDLINE]

7: Ruan B, Palioura S, Sabina J, Marvin-Guy L, Kochhar S, Larossa RA, Soll D.
 Quality control despite mistranslation caused by an ambiguous genetic code.
Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16502-7. Epub 2008 Oct 22.
PMID: 18946032 [PubMed - indexed for MEDLINE]

8: Volk AP, Heise CK, Hougen JL, Artman CM, Volk KA, Wessels D, Soll DR, Nauseef 
WM, Lamb FS, Moreland JG.
 ClC-3 and IClswell are required for normal neutrophil chemotaxis and shape
change.
J Biol Chem. 2008 Dec 5;283(49):34315-26. Epub 2008 Oct 7.
PMID: 18840613 [PubMed - indexed for MEDLINE]

9: Su D, Hohn MJ, Palioura S, Sherrer RL, Yuan J, Soll D, O'Donoghue P.
 How an obscure archaeal gene inspired the discovery of selenocysteine
biosynthesis in humans.
IUBMB Life. 2009 Jan;61(1):35-9.
PMID: 18798524 [PubMed - in process]

10: Gundllapalli S, Ambrogelly A, Umehara T, Li D, Polycarpo C, Soll D.
 Misacylation of pyrrolysine tRNA in vitro and in vivo.
FEBS Lett. 2008 Oct 15;582(23-24):3353-8. Epub 2008 Sep 5.
PMID: 18775710 [PubMed - indexed for MEDLINE]

11: Soll DR.
 Candida biofilms: is adhesion sexy?
Curr Biol. 2008 Aug 26;18(16):R717-20.
PMID: 18727911 [PubMed - indexed for MEDLINE]

12: Wrobel L, Whittington JK, Pujol C, Oh SH, Ruiz MO, Pfaller MA, Diekema DJ,
Soll DR, Hoyer LL.
 Molecular phylogenetic analysis of a geographically and temporally matched set of
Candida albicans isolates from humans and nonmigratory wildlife in central
Illinois.
Eukaryot Cell. 2008 Sep;7(9):1475-86. Epub 2008 Jul 11.
PMID: 18621922 [PubMed - indexed for MEDLINE]

13: Yuan J, Sheppard K, Soll D.
 Amino acid modifications on tRNA.
Acta Biochim Biophys Sin (Shanghai). 2008 Jul;40(7):539-53. Review.
PMID: 18604446 [PubMed - indexed for MEDLINE]

14: Rubio MA, Rinehart JJ, Krett B, Duvezin-Caubet S, Reichert AS, Soll D,
Alfonzo JD.
 Mammalian mitochondria have the innate ability to import tRNAs by a mechanism
distinct from protein import.
Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9186-91. Epub 2008 Jun 27.
PMID: 18587046 [PubMed - indexed for MEDLINE]

15: Randau L, Soll D.
 Transfer RNA genes in pieces.
EMBO Rep. 2008 Jul;9(7):623-8. Epub 2008 Jun 13.
PMID: 18552771 [PubMed - indexed for MEDLINE]

16: Randau L, Schroder I, Soll D.
 Life without RNase P.
Nature. 2008 May 1;453(7191):120-3.
PMID: 18451863 [PubMed - indexed for MEDLINE]

17: RajBhandary UL, Soll D.
 Aminoacyl-tRNAs, the bacterial cell envelope, and antibiotics.
Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5285-6. Epub 2008 Apr 2. Review. No 
abstract available.
PMID: 18385375 [PubMed - indexed for MEDLINE]

18: Sheppard K, Sherrer RL, Soll D.
 Methanothermobacter thermautotrophicus tRNA Gln confines the amidotransferase
GatCAB to asparaginyl-tRNA Asn formation.
J Mol Biol. 2008 Mar 28;377(3):845-53. Epub 2008 Jan 31.
PMID: 18291416 [PubMed - indexed for MEDLINE]

19: Sheppard K, Soll D.
 On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE.
J Mol Biol. 2008 Mar 28;377(3):831-44. Epub 2008 Jan 16.
PMID: 18279892 [PubMed - indexed for MEDLINE]

20: Sherrer RL, Ho JM, Soll D.
 Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic
O-phosphoseryl-tRNASec kinase.
Nucleic Acids Res. 2008 Apr;36(6):1871-80. Epub 2008 Feb 11.
PMID: 18267971 [PubMed - indexed for MEDLINE]

21: Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D.
 From one amino acid to another: tRNA-dependent amino acid biosynthesis.
Nucleic Acids Res. 2008 Apr;36(6):1813-25. Epub 2008 Feb 5. Review.
PMID: 18252769 [PubMed - indexed for MEDLINE]

22: Sheppard K, Akochy PM, Soll D.
 Assays for transfer RNA-dependent amino acid biosynthesis.
Methods. 2008 Feb;44(2):139-45.
PMID: 18241795 [PubMed - indexed for MEDLINE]

23: Hendrickson EL, Liu Y, Rosas-Sandoval G, Porat I, Soll D, Whitman WB, Leigh
JA.
 Global responses of Methanococcus maripaludis to specific nutrient limitations
and growth rate.
J Bacteriol. 2008 Mar;190(6):2198-205. Epub 2008 Jan 18.
PMID: 18203827 [PubMed - indexed for MEDLINE]

24: Sherrer RL, O'Donoghue P, Soll D.
 Characterization and evolutionary history of an archaeal kinase involved in
selenocysteinyl-tRNA formation.
Nucleic Acids Res. 2008 Mar;36(4):1247-59. Epub 2008 Jan 3.
PMID: 18174226 [PubMed - indexed for MEDLINE]

25: Yi S, Sahni N, Daniels KJ, Pujol C, Srikantha T, Soll DR.
 The same receptor, G protein, and mitogen-activated protein kinase pathway
activate different downstream regulators in the alternative white and opaque
pheromone responses of Candida albicans.
Mol Biol Cell. 2008 Mar;19(3):957-70. Epub 2007 Dec 27.
PMID: 18162580 [PubMed - indexed for MEDLINE]

26: Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane 
H, Domae N, Defranco J, Soll D, Nureki O.
 Structural insights into RNA-dependent eukaryal and archaeal selenocysteine
formation.
Nucleic Acids Res. 2008 Mar;36(4):1187-99. Epub 2007 Dec 23.
PMID: 18158303 [PubMed - indexed for MEDLINE]

27: Bougnoux ME, Pujol C, Diogo D, Bouchier C, Soll DR, d'Enfert C.
 Mating is rare within as well as between clades of the human pathogen Candida
albicans.
Fungal Genet Biol. 2008 Mar;45(3):221-31. Epub 2007 Oct 23.
PMID: 18063395 [PubMed - indexed for MEDLINE]

28: Soll D.
 The genetic code revisited--four decades after Francis Crick.
Nucleic Acids Symp Ser (Oxf). 2007;(51):13-4. No abstract available.
PMID: 18029562 [PubMed - indexed for MEDLINE]

29: Sidani M, Wessels D, Mouneimne G, Ghosh M, Goswami S, Sarmiento C, Wang W,
Kuhl S, El-Sibai M, Backer JM, Eddy R, Soll D, Condeelis J.
 Cofilin determines the migration behavior and turning frequency of metastatic
cancer cells.
J Cell Biol. 2007 Nov 19;179(4):777-91.
PMID: 18025308 [PubMed - indexed for MEDLINE]

30: Namy O, Zhou Y, Gundllapalli S, Polycarpo CR, Denise A, Rousset JP, Soll D,
Ambrogelly A.
 Adding pyrrolysine to the Escherichia coli genetic code.
FEBS Lett. 2007 Nov 13;581(27):5282-8. Epub 2007 Oct 23.
PMID: 17967457 [PubMed - indexed for MEDLINE]

31: Levengood JD, Roy H, Ishitani R, Soll D, Nureki O, Ibba M.
 Anticodon recognition and discrimination by the alpha-helix cage domain of class 
I lysyl-tRNA synthetase.
Biochemistry. 2007 Oct 2;46(39):11033-8. Epub 2007 Aug 31.
PMID: 17760422 [PubMed - indexed for MEDLINE]

32: Zhao X, Oh SH, Jajko R, Diekema DJ, Pfaller MA, Pujol C, Soll DR, Hoyer LL.
 Analysis of ALS5 and ALS6 allelic variability in a geographically diverse
collection of Candida albicans isolates.
Fungal Genet Biol. 2007 Dec;44(12):1298-309. Epub 2007 Jun 2.
PMID: 17625934 [PubMed - indexed for MEDLINE]

33: Wessels D, Lusche DF, Kuhl S, Heid P, Soll DR.
 PTEN plays a role in the suppression of lateral pseudopod formation during
Dictyostelium motility and chemotaxis.
J Cell Sci. 2007 Aug 1;120(Pt 15):2517-31. Epub 2007 Jul 10.
PMID: 17623773 [PubMed - indexed for MEDLINE]

34: Kavran JM, Gundllapalli S, O'Donoghue P, Englert M, Soll D, Steitz TA.
 Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code
innovation.
Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11268-73. Epub 2007 Jun 25.
PMID: 17592110 [PubMed - indexed for MEDLINE]

35: Herring S, Ambrogelly A, Gundllapalli S, O'Donoghue P, Polycarpo CR, Soll D.
 The amino-terminal domain of pyrrolysyl-tRNA synthetase is dispensable in vitro
but required for in vivo activity.
FEBS Lett. 2007 Jul 10;581(17):3197-203. Epub 2007 Jun 12.
PMID: 17582401 [PubMed - indexed for MEDLINE]

36: Wu W, Lockhart SR, Pujol C, Srikantha T, Soll DR.
 Heterozygosity of genes on the sex chromosome regulates Candida albicans
virulence.
Mol Microbiol. 2007 Jun;64(6):1587-604.
PMID: 17555440 [PubMed - indexed for MEDLINE]

37: Ambrogelly A, Gundllapalli S, Herring S, Polycarpo C, Frauer C, Soll D.
 Pyrrolysine is not hardwired for cotranslational insertion at UAG codons.
Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3141-6. Epub 2007 Feb 20.
PMID: 17360621 [PubMed - indexed for MEDLINE]

38: Sheppard K, Akochy PM, Salazar JC, Soll D.
 The Helicobacter pylori amidotransferase GatCAB is equally efficient in
glutamine-dependent transamidation of Asp-tRNAAsn and Glu-tRNAGln.
J Biol Chem. 2007 Apr 20;282(16):11866-73. Epub 2007 Feb 28.
PMID: 17329242 [PubMed - indexed for MEDLINE]

39: Kamtekar S, Hohn MJ, Park HS, Schnitzbauer M, Sauerwald A, Soll D, Steitz TA.
 Toward understanding phosphoseryl-tRNACys formation: the crystal structure of
Methanococcus maripaludis phosphoseryl-tRNA synthetase.
Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2620-5. Epub 2007 Feb 14.
PMID: 17301225 [PubMed - indexed for MEDLINE]

40: Herring S, Ambrogelly A, Polycarpo CR, Soll D.
 Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense
pyrrolysyl-tRNA synthetase.
Nucleic Acids Res. 2007;35(4):1270-8. Epub 2007 Jan 31.
PMID: 17267409 [PubMed - indexed for MEDLINE]

41: Namgoong S, Sheppard K, Sherrer RL, Soll D.
 Co-evolution of the archaeal tRNA-dependent amidotransferase GatCAB with
tRNA(Asn).
FEBS Lett. 2007 Jan 23;581(2):309-14. Epub 2007 Jan 2.
PMID: 17214986 [PubMed - indexed for MEDLINE]

42: Soll D, RajBhandary UL.
 The genetic code - thawing the 'frozen accident'.
J Biosci. 2006 Oct;31(4):459-63. Review. No abstract available.
PMID: 17206066 [PubMed - indexed for MEDLINE]

43: Ambrogelly A, Palioura S, Soll D.
 Natural expansion of the genetic code.
Nat Chem Biol. 2007 Jan;3(1):29-35. Review.
PMID: 17173027 [PubMed - indexed for MEDLINE]

44: Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM,
Whitman WB, Soll D.
 RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and 
archaea.
Proc Natl Acad Sci U S A. 2006 Dec 12;103(50):18923-7. Epub 2006 Dec 1.
PMID: 17142313 [PubMed - indexed for MEDLINE]

45: Polycarpo CR, Herring S, Berube A, Wood JL, Soll D, Ambrogelly A.
 Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase.
FEBS Lett. 2006 Dec 11;580(28-29):6695-700. Epub 2006 Nov 20.
PMID: 17126325 [PubMed - indexed for MEDLINE]

46: Cardoso AM, Polycarpo C, Martins OB, Soll D.
 A non-discriminating aspartyl-tRNA synthetase from Halobacterium salinarum.
RNA Biol. 2006 Jul;3(3):110-4. Epub 2006 Jul 23.
PMID: 17114946 [PubMed - indexed for MEDLINE]

47: Hohn MJ, Park HS, O'Donoghue P, Schnitzbauer M, Soll D.
 Emergence of the universal genetic code imprinted in an RNA record.
Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18095-100. Epub 2006 Nov 16.
PMID: 17110438 [PubMed - indexed for MEDLINE]

48: Helgadottir S, Rosas-Sandoval G, Soll D, Graham DE.
 Biosynthesis of phosphoserine in the Methanococcales.
J Bacteriol. 2007 Jan;189(2):575-82. Epub 2006 Oct 27.
PMID: 17071763 [PubMed - indexed for MEDLINE]

49: Srikantha T, Borneman AR, Daniels KJ, Pujol C, Wu W, Seringhaus MR, Gerstein 
M, Yi S, Snyder M, Soll DR.
 TOS9 regulates white-opaque switching in Candida albicans.
Eukaryot Cell. 2006 Oct;5(10):1674-87. Epub 2006 Sep 1.
PMID: 16950924 [PubMed - indexed for MEDLINE]

50: Williams RS, Boeckeler K, Graf R, Muller-Taubenberger A, Li Z, Isberg RR,
Wessels D, Soll DR, Alexander H, Alexander S.
 Towards a molecular understanding of human diseases using Dictyostelium
discoideum.
Trends Mol Med. 2006 Sep;12(9):415-24. Epub 2006 Aug 4. Review.
PMID: 16890490 [PubMed - indexed for MEDLINE]

51: Zhao X, Daniels KJ, Oh SH, Green CB, Yeater KM, Soll DR, Hoyer LL.
 Candida albicans Als3p is required for wild-type biofilm formation on silicone
elastomer surfaces.
Microbiology. 2006 Aug;152(Pt 8):2287-99.
PMID: 16849795 [PubMed - indexed for MEDLINE]

52: Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer
RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Soll D, Nureki O.
 Structural basis of RNA-dependent recruitment of glutamine to the genetic code.
Science. 2006 Jun 30;312(5782):1950-4.
PMID: 16809540 [PubMed - indexed for MEDLINE]

53: Bilokapic S, Maier T, Ahel D, Gruic-Sovulj I, Soll D, Weygand-Durasevic I,
Ban N.
 Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent 
mode of substrate recognition.
EMBO J. 2006 Jun 7;25(11):2498-509. Epub 2006 May 4.
PMID: 16675947 [PubMed - indexed for MEDLINE]

54: Charriere F, Helgadottir S, Horn EK, Soll D, Schneider A.
 Dual targeting of a single tRNA(Trp) requires two different tryptophanyl-tRNA
synthetases in Trypanosoma brucei.
Proc Natl Acad Sci U S A. 2006 May 2;103(18):6847-52. Epub 2006 Apr 24.
PMID: 16636268 [PubMed - indexed for MEDLINE]

55: Daniels KJ, Srikantha T, Lockhart SR, Pujol C, Soll DR.
 Opaque cells signal white cells to form biofilms in Candida albicans.
EMBO J. 2006 May 17;25(10):2240-52. Epub 2006 Apr 20.
PMID: 16628217 [PubMed - indexed for MEDLINE]

56: Choi JJ, Nam KH, Min B, Kim SJ, Soll D, Kwon ST.
 Protein trans-splicing and characterization of a split family B-type DNA
polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans.
J Mol Biol. 2006 Mar 10;356(5):1093-106. Epub 2005 Dec 27.
PMID: 16412462 [PubMed - indexed for MEDLINE]

57: Sabina J, Soll D.
 The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not
required for archaeosine formation.
J Biol Chem. 2006 Mar 17;281(11):6993-7001. Epub 2006 Jan 10.
PMID: 16407303 [PubMed - indexed for MEDLINE]