TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= uniprot|P0A6B7|ISCS_ECOLI Cysteine desulfurase;
         (404 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006068|AE006068 Pasteurella multocida subsp. multocida st...   659   0.0  
embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st...   101   8e-23

>embl|AE006068|AE006068 Pasteurella multocida subsp. multocida str.
           Pm70 section 35 of 204 of the complete genome.
          Length = 11223

 Score =  659 bits (1699), Expect = 0.0
 Identities = 319/404 (78%), Positives = 366/404 (90%)
 Frame = +3

Query: 1   MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD 60
           MKLPIYLDY+AT PVD RVA+KMM+++T++G FGNPASRSH+FGWQAEEAVD+ARN IAD
Sbjct: 582 MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNYIAD 761

Query: 61  LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE 120
           L+GAD REIVFTSGATESDNLAIKGAA+FYQ KGKHIIT KTEHKAVLDTCRQLEREGFE
Sbjct: 762 LIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFE 941

Query: 121 VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD 180
           VTYL P+ +G+IDL+EL+ AMRDDTILVSIMHVNNEIGV+QDIAAIGE+CRAR I++HVD
Sbjct: 942 VTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVD 1121

Query: 181 ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR 240
           ATQSVGKLPI+L++LKVDLMS S HK+YGPKGIGALYV RKPRVR+EA +HGGGHERGMR
Sbjct: 1122ATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMR 1301

Query: 241 SGTLPVHQIVGMGEAYRIAKEEMATEMEXXXXXXXXXXXXIKDIEEVYLNGDLEHGAPNI 300
           SGTLPVHQIVGMGEAYRI KEEMA+EM             +KDIEE Y+NG +EH   + 
Sbjct: 1302SGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSN 1481

Query: 301 LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 360
           LN+SFNYVEGESL+MAL+D+AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF+LGR+
Sbjct: 1482LNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRY 1661

Query: 361 TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404
           TTEEEIDYTIELV+ ++ +LR+LSPLW+M+K+G+DLN+IEW HH
Sbjct: 1662TTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH 1793


>embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str. Pm70
             section 93 of 204 of the complete genome.
          Length = 12635

 Score =  101 bits (251), Expect = 8e-23
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 7/236 (2%)
 Frame = +3

Query: 5     IYLDYSATTPVDPRVAEKMMQFMTMDGT--FGNPASRSHRFGWQAEEAV--DIARNQIAD 60
             +YLD SA T + P+V          D T  F   A   HR  +  ++    + AR  + +
Sbjct: 10881 VYLD-SAATALKPQVLT--------DATIAFYQSAGSVHRSQYDEKQTALFEQARENVKN 11033

Query: 61    LVGADPRE-IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 119
              +GA+  E I++TSG T + N   +G ++    K + II S+ +H A   T  ++ R+  
Sbjct: 11034 FIGAESEETIIWTSGTTHAINCVARGLSHQLHPKAE-IIISEADHHANFVTWSEIARQYG 11210

Query: 120   EVTYLAP-QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG-IIY 177
                ++ P     +I+ ++L A +  +T+LV++  V+N  G  Q +A + ++ R     + 
Sbjct: 11211 ATLHILPINEQWLIEEQDLIAVLNTNTVLVALNMVSNVTGTEQPVANLIKLIRQHSHALV 11390

Query: 178   HVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGG 233
              VDA Q++  LPIDL +L  D ++FS HK+YGP G+G L  +R    ++   ++GG
Sbjct: 11391 LVDAAQAISHLPIDLQRLDADFIAFSAHKLYGPNGLGVLSGKRHALEQLHPLLYGG 11558


  Database: pm
    Posted date:  Oct 25, 2008  9:50 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 782,782
Number of extensions: 8884
Number of successful extensions: 42
Number of sequences better than 1.0e-03: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 756,529
Length adjustment: 84
Effective length of query: 320
Effective length of database: 739,393
Effective search space: 236605760
Effective search space used: 236605760
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)