ERROR: if "codon(Output format)" is selected, don't use "Remove gaps, inframe stop codons" or "Remove mismatches" or "Use only selected positions".
Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package: | |
KS = 2.5240 | |
KA = 0.2252 | |
KA/KS = 0.0892 | |
You can see the parameters used in codeml to calculate these values. | |
If you use these values, please cite the following peper: | |
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