MEGABLAST 2.2.15 [Oct-15-2006]


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), 
"A greedy algorithm for aligning DNA sequences", 
J Comput Biol 2000; 7(1-2):203-14.

Database: ss 
           272 sequences; 3,008,365 total letters

Searching..................................................done

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
         (76 letters)

 ***** No hits found ******


  Database: ss
    Posted date:  Oct 7, 2007 12:18 PM
  Number of letters in database: 3,008,365
  Number of sequences in database:  272
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 272
Number of Hits to DB: 95
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 76
Length of database: 3,008,365
Length adjustment: 14
Effective length of query: 62
Effective length of database: 3,004,557
Effective search space: 186282534
Effective search space used: 186282534
Window for multiple hits: 40
X1: 11 (21.8 bits)
X2: 20 (39.6 bits)
X3: 51 (101.1 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)