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Links to Frequently Used Web Pages

Links to Web Pages Concerning BioInformatics, Biotechnology and Bioengineering

Swiss-Prot, Trembl, UniProt on the ExPASy server (Expert Protein Analysis System)

UniProt on the EBI server (European Bioinformatics Institute)

SRS Sequence Retrieval System: Access to Swiss-Prot, TrEMBL and other databases using the Sequence Retrieval System

PubMed (BioMedical Science Litterature Searching System), TaxBrowser (Encyclopedia of Systematics) on the NCBI server (National Center for Biotechnology Information)

PFam (Protein Family)

UniProt KnowledgeBase

PDB (Protein Data Bank)

SDPPred: Alignment- large with columns without gaps larger than 300 and a sequence larger than 40

SDPPred: Alignment- small

ORF-Finder, OpenReadFrame Finder identifies Open Readig Frames on both complementary chains

GeneMark- Program for Statistical Prediction of Genes

GeneScan- Program for Statistical Recognition of Genes. Prediction of ends of exons and introns, promotors and polyA-sites.

BLASTX- Searches formal translates of the "input sequence", prediction of isoforms of genes

SMART (a Simple Modular Architecture Research Tool) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures.

TIGRFAMs are protein families based on Hidden Markov Models or HMMs. Use this page to see the curated seed alignmet for each TIGRFAM, the full alignment of all family members and the cutoff scores for inclusion in each of the TIGRFAMs. Also use this page to search through the TIGRFAMs and HMMs for text in the TIGRFAMs Text Search or search for specific sequences in the TIGRFAMs Sequence Search.

ProDom is a comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases

Phylogeny: Phylip Programs

Links to Other Useful Web Pages

Encyclopedia for all Language Confused Exchange Students and Professors up among the clouds

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© Santesson Elly, 2004