MEGABLAST 2.2.10 [Oct-19-2004] Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: bs 21 sequences; 4,215,470 total letters Searching. done Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. (76 letters) Score E Sequences producing significant alignments: (bits) Value Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21... 113 2e-26 Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 2... 109 3e-25 Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21... 36 0.003 Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 2... 32 0.052 >Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080. Length = 213080 Score = 113 bits (57), Expect = 2e-26 Identities = 67/70 (95%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggaggtctgcggttcgatcccgcata 67 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 166259 tagctcagctgggagagcgcctgctttgcacgcaggaggtcagcggttcgatcccgc-ta 166317 Query: 68 g-ctccacca 76 | |||||||| Sbjct: 166318 ggctccacca 166327 Score = 113 bits (57), Expect = 2e-26 Identities = 67/70 (95%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggaggtctgcggttcgatcccgcata 67 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 96150 tagctcagctgggagagcgcctgctttgcacgcaggaggtcagcggttcgatcccgc-ta 96208 Query: 68 g-ctccacca 76 | |||||||| Sbjct: 96209 ggctccacca 96218 Score = 113 bits (57), Expect = 2e-26 Identities = 67/70 (95%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggaggtctgcggttcgatcccgcata 67 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 32025 tagctcagctgggagagcgcctgctttgcacgcaggaggtcagcggttcgatcccgc-ta 32083 Query: 68 g-ctccacca 76 | |||||||| Sbjct: 32084 ggctccacca 32093 Score = 113 bits (57), Expect = 2e-26 Identities = 67/70 (95%), Gaps = 2/70 (2%) Strand = Plus / Plus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggaggtctgcggttcgatcccgcata 67 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 11557 tagctcagctgggagagcgcctgctttgcacgcaggaggtcagcggttcgatcccgc-ta 11615 Query: 68 g-ctccacca 76 | |||||||| Sbjct: 11616 ggctccacca 11625 >Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to 3213379. Length = 199922 Score = 109 bits (55), Expect = 3e-25 Identities = 65/68 (95%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggaggtctgcggttcgatcccgcata 67 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct: 158623 tagctcagctgggagagcgcctgctttgcacgcaggaggtcagcggttcgatcccgc-ta 158565 Query: 68 g-ctccac 74 | |||||| Sbjct: 158564 ggctccac 158557 Score = 46.1 bits (23), Expect = 3e-06 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1 ggggctatagctcagctgggagagcgc 27 ||||| ||||||||||||||||||||| Sbjct: 180109 ggggccatagctcagctgggagagcgc 180083 Score = 42.1 bits (21), Expect = 5e-05 Identities = 59/71 (83%), Gaps = 4/71 (5%) Strand = Plus / Minus Query: 8 tagctcagctgggagagcgcctgctttgcacgcaggagg-tctgcggttcgatcccg-ca 65 |||||||||||||||||| |||| || || |||| ||| || ||||||||| |||| || Sbjct: 159380 tagctcagctgggagagcatctgccttacaagcag-agggtcggcggttcgagcccgtca 159322 Query: 66 tagctccacca 76 | |||||||| Sbjct: 159321 tc-ctccacca 159312 >Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21): from 813670 to 1011078. Length = 197409 Score = 36.2 bits (18), Expect = 0.003 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tagctcagctgggagagc 25 |||||||||||||||||| Sbjct: 137541 tagctcagctgggagagc 137558 >Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to 4214630. Length = 203901 Score = 32.2 bits (16), Expect = 0.052 Identities = 27/30 (90%), Gaps = 3/30 (10%) Strand = Plus / Minus Query: 36 cacgcaggaggtctgcgg-ttcga-tcccg 63 ||||||||||||| |||| ||||| ||||| Sbjct: 143229 cacgcaggaggtc-gcgggttcgagtcccg 143201 Database: bs Posted date: Dec 3, 2006 8:49 PM Number of letters in database: 4,215,470 Number of sequences in database: 21 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 0, Extension: 0 Number of Hits to DB: 122 Number of Sequences: 21 Number of extensions: 9 Number of successful extensions: 9 Number of sequences better than 1000000.0: 4 Number of HSP's better than 1000000.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 76 length of database: 4,215,470 effective HSP length: 15 effective length of query: 61 effective length of database: 4,215,155 effective search space: 257124455 effective search space used: 0 S2: 4 ( 8.4 bits)