TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sp|P0A873|TRMD_ECOLI tRNA (guanine-N(1)-)-methyltransferase OS=Escherichia coli (strain K12) GN=trmD PE=1 SV=1 (255 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008821 AE006468 |AE008821| Salmonella typhimurium LT2, section... 478 e-136 embl|AE006168|AE006168 Pasteurella multocida subsp. multocida st... 398 e-112 AE012219 AE008922 |AE012219| Xanthomonas campestris pv. campestr... 256 6e-69 >AE008821 AE006468 |AE008821| Salmonella typhimurium LT2, section 125 of 220 of the complete genome. Length = 21387 Score = 478 bits (1230), Expect = e-136 Identities = 234/255 (91%), Positives = 241/255 (94%) Frame = -2 Query: 1 MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGM 60 ++IGI+SLFPEMFRAITDYGVTGRAVK GLL+IQSWSPRDF HDRHRTVDDRPYGGGPGM Sbjct: 14171 VFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDRHRTVDDRPYGGGPGM 13992 Query: 61 LMMVQPLRDAIHXXXXXXXXXXXVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDE 120 LMMVQPLRDAIH VIYLSPQGRKLDQAGVSELATNQKLILVCGRYEG+DE Sbjct: 13991 LMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGVDE 13812 Query: 121 RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPH 180 RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSV+RFIPGVLGHEASA EDSFA+GLLDCPH Sbjct: 13811 RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHEASAIEDSFADGLLDCPH 13632 Query: 181 YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF 240 YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF Sbjct: 13631 YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF 13452 Query: 241 KTEHAQQQHKHDGMA 255 KTEHAQQQHKHDGMA Sbjct: 13451 KTEHAQQQHKHDGMA 13407 >embl|AE006168|AE006168 Pasteurella multocida subsp. multocida str. Pm70 section 135 of 204 of the complete genome. Length = 11367 Score = 398 bits (1023), Expect = e-112 Identities = 188/245 (76%), Positives = 217/245 (88%) Frame = +1 Query: 1 MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGM 60 M +GIISLFPEMF+AIT++GVTGRAVK LL ++ W+PRDFTHD+H+TVDDRPYGGGPGM Sbjct: 7219 MLVGIISLFPEMFKAITEFGVTGRAVKQNLLQVRCWNPRDFTHDKHKTVDDRPYGGGPGM 7398 Query: 61 LMMVQPLRDAIHXXXXXXXXXXXVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDE 120 LMMVQPLRDAI VIYLSPQGRKLDQAGV ELA +QKLIL+CGRYEGIDE Sbjct: 7399 LMMVQPLRDAIQAAKAEVGEGAKVIYLSPQGRKLDQAGVKELAQHQKLILLCGRYEGIDE 7578 Query: 121 RVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSFAEGLLDCPH 180 R+I+TE+DEEWS+GDYVL+GGELPAMTLID+V+RFIPGVLG +ASA EDSFAEGLLDCPH Sbjct: 7579 RLIETEVDEEWSVGDYVLTGGELPAMTLIDAVARFIPGVLGKQASADEDSFAEGLLDCPH 7758 Query: 181 YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF 240 YTRPEVL+G+ VPPVL+SGNH EIR+WRL+QSL RTWLRRPELLE+LALT+EQ +LL + Sbjct: 7759 YTRPEVLDGLAVPPVLMSGNHEEIRKWRLRQSLERTWLRRPELLESLALTDEQRKLLKQI 7938 Query: 241 KTEHA 245 K EH+ Sbjct: 7939 KAEHS 7953 >AE012219 AE008922 |AE012219| Xanthomonas campestris pv. campestris str. ATCC 33913, section 127 of 460 of the complete genome. Length = 11476 Score = 256 bits (653), Expect = 6e-69 Identities = 130/250 (52%), Positives = 161/250 (64%), Gaps = 2/250 (0%) Frame = +3 Query: 3 IGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGMLM 62 I +ISLFPE +GV GRA + GLL ++ W+PRD +R VDDRP+GGGPGM+M Sbjct: 3879 IDVISLFPEFIAQCAAFGVVGRAQERGLLELKGWNPRDHAQGNYRRVDDRPFGGGPGMVM 4058 Query: 63 MVQPLRDAIHXXXXXXXXXXXVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDERV 122 +++PLR + VIYLSPQGR L Q ELA +++L+CGRYEG+DER Sbjct: 4059 LIEPLRACLEVAQAADARPAPVIYLSPQGRPLTQPLARELAQLPRMVLLCGRYEGVDERF 4238 Query: 123 IQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASATEDSF--AEGLLDCPH 180 + +D E SIGDYVLSGGEL A L+D V+R GVL SA +DSF +GLLDCPH Sbjct: 4239 LDQAVDMEISIGDYVLSGGELGAAVLVDVVTRLQDGVLNDAESAAQDSFEGPQGLLDCPH 4418 Query: 181 YTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEF 240 Y+ P +VP VL SGNH I RWR +QSLGRTWLRRPELL+ L ++ RLL EF Sbjct: 4419 YSHPSSHAWGDVPEVLRSGNHGAIARWRRQQSLGRTWLRRPELLDEATLDKQDRRLLEEF 4598 Query: 241 KTEHAQQQHK 250 + E A K Sbjct: 4599 RRELAPGDEK 4628 Database: all Posted date: Nov 7, 2008 5:17 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 4,268,326 Number of extensions: 69319 Number of successful extensions: 372 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 371 Number of HSP's successfully gapped: 3 Length of query: 255 Length of database: 4,081,295 Length adjustment: 91 Effective length of query: 164 Effective length of database: 4,000,851 Effective search space: 656139564 Effective search space used: 656139564 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)