########################################
# Program: water
# Rundate: Mon 20 Apr 2009 01:45:05
# Commandline: water
#    [-asequence] rbsb_ecoli.fasta
#    [-bsequence] alsb_ecoli.fasta
#    [-outfile] small.water
#    -gapopen 5
#    -gapextend 0.25
# Align_format: srspair
# Report_file: small.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: ALSB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 5.0
# Extend_penalty: 0.25
#
# Length: 342
# Identity:     124/342 (36.3%)
# Similarity:   182/342 (53.2%)
# Gaps:          77/342 (22.5%)
# Score: 470.75
# 
#
#=======================================

RBSB_ECOLI         1 MNMKKL----ATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKD     46
                     || |.|    .||| .:.|| | ||.|.|:  .|:|:.||:|||:|.:|.
ALSB_ECOLI         1 MN-KYLKYFSGTLV-GLMLS-T-SAFAAAE--YAVVLKTLSNPFWVDMKK     44

RBSB_ECOLI        47 GAQKEADKLGYNLVVLDSQNNPAK-----ELANVQDLTVRGTKILLINPT     91
                     |.:.||..||   |.:|...:|::     :|...:||:.:..|.:...|.
ALSB_ECOLI        45 GIEDEAKTLG---VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL     91

RBSB_ECOLI        92 DSDAVGNAVKMANQANIPV----------ITLD--------RQATKGEVV    123
                     .|  | |.|       :||          :.||        ::| .|.|.
ALSB_ECOLI        92 SS--V-NLV-------MPVARAWKKGIYLVNLDEKIDMDNLKKA-GGNVE    130

RBSB_ECOLI       124 SHIASDNV-LGGKIAG-DYIAKKAG-EGAKVIELQGIAGTSA--ARERG-    167
                     :.:.:||| :|.|  | .:|..|.| ||.:|..::|.||.::  ||..| 
ALSB_ECOLI       131 AFVTTDNVAVGAK--GASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGA    178

RBSB_ECOLI       168 -EGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQND    216
                      |.|::   |.:..::||||||:||||.|:|..|:|..:|:::|::..||
ALSB_ECOLI       179 TEAFKK---ASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCAND    225

RBSB_ECOLI       217 EMALGALRALQTAGKS-DVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI    265
                     .||:|..:|:..|||: .|:|||.||.|:..|.|..|::.||:||.|..|
ALSB_ECOLI       226 TMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADI    275

RBSB_ECOLI       266 GAKGVE---TADKVLKGEKVQAKYPVD----LKLV----VKQ    296
                     ||.|::   .|:|  .| ||   .|:|    .|||    |.|
ALSB_ECOLI       276 GATGLKLMVDAEK--SG-KV---IPLDKAPEFKLVDSILVTQ    311


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