########################################
# Program: water
# Rundate: Mon 30 Mar 2009 02:51:34
# Commandline: water
#    [-asequence] rbsb_ecoli.fasta
#    [-bsequence] alsb_ecoli.fasta
#    [-outfile] rbsb_alsb.water
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: rbsb_alsb.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: ALSB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     104/311 (33.4%)
# Similarity:   164/311 (52.7%)
# Gaps:          18/311 ( 5.8%)
# Score: 391.0
# 
#
#=======================================

RBSB_ECOLI         3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEA     52
                     |.|.....|...:...:|.:|.|....|:|:.||:|||:|.:|.|.:.||
ALSB_ECOLI         1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEA     50

RBSB_ECOLI        53 DKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV    100
                     ..||.::.:.  .|:.:...:|...:||:.:..|.:...|..|..:...|
ALSB_ECOLI        51 KTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV    100

RBSB_ECOLI       101 KMANQANIPVITLDR-------QATKGEVVSHIASDNV-LGGKIAGDYIA    142
                     ..|.:..|.::.||.       :...|.|.:.:.:||| :|.|.|...|.
ALSB_ECOLI       101 ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIID    150

RBSB_ECOLI       143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDR    191
                     |...||.:|..::|.||.::...|..|..:|. .|.:..::||||||:||
ALSB_ECOLI       151 KLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDR    200

RBSB_ECOLI       192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFD    240
                     ||.|:|..|:|..:|:::|::..||.||:|..:|:..|||: .|:|||.|
ALSB_ECOLI       201 IKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTD    250

RBSB_ECOLI       241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGV------ETADKVLKGEKVQA    284
                     |.|:..|.|..|::.||:||.|..|||.|:      |.:.||:..:|...
ALSB_ECOLI       251 GIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPE    300

RBSB_ECOLI       285 KYPVDLKLVVK    295
                     ...||..||.:
ALSB_ECOLI       301 FKLVDSILVTQ    311


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