########################################
# Program: needle
# Rundate: Sun 29 Mar 2009 20:10:11
# Commandline: needle
#    [-asequence] rbsb_ecoli.fasta
#    [-bsequence] alsb_ecoli.fasta
#    [-outfile] rbsb_alsb.needle
#    -auto
# Align_format: srspair
# Report_file: rbsb_alsb.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: ALSB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 314
# Identity:     104/314 (33.1%)
# Similarity:   164/314 (52.2%)
# Gaps:          21/314 ( 6.7%)
# Score: 391.0
# 
#
#=======================================

RBSB_ECOLI         1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQK     50
                       |.|.....|...:...:|.:|.|....|:|:.||:|||:|.:|.|.:.
ALSB_ECOLI         1 --MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIED     48

RBSB_ECOLI        51 EADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN     98
                     ||..||.::.:.  .|:.:...:|...:||:.:..|.:...|..|..:..
ALSB_ECOLI        49 EAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVM     98

RBSB_ECOLI        99 AVKMANQANIPVITLDR-------QATKGEVVSHIASDNV-LGGKIAGDY    140
                     .|..|.:..|.::.||.       :...|.|.:.:.:||| :|.|.|...
ALSB_ECOLI        99 PVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFI    148

RBSB_ECOLI       141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADF    189
                     |.|...||.:|..::|.||.::...|..|..:|. .|.:..::||||||:
ALSB_ECOLI       149 IDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADW    198

RBSB_ECOLI       190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVG    238
                     ||||.|:|..|:|..:|:::|::..||.||:|..:|:..|||: .|:|||
ALSB_ECOLI       199 DRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVG    248

RBSB_ECOLI       239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGV------ETADKVLKGEKV    282
                     .||.|:..|.|..|::.||:||.|..|||.|:      |.:.||:..:|.
ALSB_ECOLI       249 TDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKA    298

RBSB_ECOLI       283 QAKYPVDLKLVVKQ    296
                     .....||..||.: 
ALSB_ECOLI       299 PEFKLVDSILVTQ-    311


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