########################################
# Program: water
# Rundate: Mon 30 Mar 2009 03:01:16
# Commandline: water
#    [-asequence] rbsb_ecoli.fasta
#    [-bsequence] alsb_ecoli.fasta
#    [-outfile] aa.water
#    -gapopen 30
#    -gapextend 1.5
# Align_format: srspair
# Report_file: aa.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: ALSB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 30.0
# Extend_penalty: 1.5
#
# Length: 292
# Identity:      99/292 (33.9%)
# Similarity:   156/292 (53.4%)
# Gaps:          12/292 ( 4.1%)
# Score: 279.5
# 
#
#=======================================

RBSB_ECOLI         3 MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEA     52
                     |.|.....|...:...:|.:|.|....|:|:.||:|||:|.:|.|.:.||
ALSB_ECOLI         1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEA     50

RBSB_ECOLI        53 DKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV    100
                     ..||.::.:.  .|:.:...:|...:||:.:..|.:...|..|..:...|
ALSB_ECOLI        51 KTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV    100

RBSB_ECOLI       101 KMANQANIPVITLDR-------QATKGEVVSHIASDNV-LGGKIAGDYIA    142
                     ..|.:..|.::.||.       :...|.|.:.:.:||| :|.|.|...|.
ALSB_ECOLI       101 ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIID    150

RBSB_ECOLI       143 KKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADFDR    191
                     |...||.:|..::|.||.::...|..|..:|. .|.:..::||||||:||
ALSB_ECOLI       151 KLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDR    200

RBSB_ECOLI       192 IKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVGFD    240
                     ||.|:|..|:|..:|:::|::..||.||:|..:|:..|||: .|:|||.|
ALSB_ECOLI       201 IKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTD    250

RBSB_ECOLI       241 GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKV    282
                     |.|:..|.|..|::.||:||.|..|||.|::......|..||
ALSB_ECOLI       251 GIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKV    292


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