########################################
# Program: needle
# Rundate: Mon 30 Mar 2009 01:57:31
# Commandline: needle
#    [-asequence] rbsb_ecoli.fasta
#    [-bsequence] alsb_ecoli.fasta
#    [-outfile] aa.needle
#    -gapopen 30
#    -gapextend 1.5
# Align_format: srspair
# Report_file: aa.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: RBSB_ECOLI
# 2: ALSB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 30.0
# Extend_penalty: 1.5
#
# Length: 313
# Identity:     100/313 (31.9%)
# Similarity:   158/313 (50.5%)
# Gaps:          19/313 ( 6.1%)
# Score: 264.5
# 
#
#=======================================

RBSB_ECOLI         1 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQK     50
                       |.|.....|...:...:|.:|.|....|:|:.||:|||:|.:|.|.:.
ALSB_ECOLI         1 --MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIED     48

RBSB_ECOLI        51 EADKLGYNLVVL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN     98
                     ||..||.::.:.  .|:.:...:|...:||:.:..|.:...|..|..:..
ALSB_ECOLI        49 EAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVM     98

RBSB_ECOLI        99 AVKMANQANIPVITLDR-------QATKGEVVSHIASDNV-LGGKIAGDY    140
                     .|..|.:..|.::.||.       :...|.|.:.:.:||| :|.|.|...
ALSB_ECOLI        99 PVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFI    148

RBSB_ECOLI       141 IAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLASQPADF    189
                     |.|...||.:|..::|.||.::...|..|..:|. .|.:..::||||||:
ALSB_ECOLI       149 IDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADW    198

RBSB_ECOLI       190 DRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKS-DVMVVG    238
                     ||||.|:|..|:|..:|:::|::..||.||:|..:|:..|||: .|:|||
ALSB_ECOLI       199 DRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVG    248

RBSB_ECOLI       239 FDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV    288
                     .||.|:..|.|..|::.||:||.|..|||.|::......|..||......
ALSB_ECOLI       249 TDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKA    298

RBSB_ECOLI       289 DLKLVVKQ-----    296
                     ....:|..     
ALSB_ECOLI       299 PEFKLVDSILVTQ    311


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