TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= HSLU_ECOLI molecular chaperone and ATPase component of HslUV protease (443 letters) Database: pm 204 sequences; 2,269,587 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value embl|AE006212|AE006212 Pasteurella multocida subsp. multocida st... 694 0.0 embl|AE006234|AE006234 Pasteurella multocida subsp. multocida st... 121 7e-29 embl|AE006080|AE006080 Pasteurella multocida subsp. multocida st... 47 2e-06 embl|AE006206|AE006206 Pasteurella multocida subsp. multocida st... 40 2e-04 >embl|AE006212|AE006212 Pasteurella multocida subsp. multocida str. Pm70 section 179 of 204 of the complete genome. Length = 13738 Score = 694 bits (1792), Expect = 0.0 Identities = 356/443 (80%), Positives = 394/443 (88%) Frame = -3 Query: 1 MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTG 60 MSEMTPREIVSELD+HIIGQ +AKR+VAIALRNRWRRMQL E LRHEVTPKNILMIGPTG Sbjct: 4424 MSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTG 4245 Query: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR 120 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD+A+K+VR IEKNR Sbjct: 4244 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNR 4065 Query: 121 YRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAA 180 +RAEE AE+RILD L+PPAKN WGQ E + RQ FRKKLREGQLDDKEI+ID+AA Sbjct: 4064 FRAEEAAEDRILDALLPPAKNQWGQVETTDSNNTTRQVFRKKLREGQLDDKEIDIDVAAP 3885 Query: 181 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240 MGVEIMAPPGMEEMT+QLQSMFQNL + K RK+KIKDA+K LI++EAAKL+NPE+LK Sbjct: 3884 SMGVEIMAPPGMEEMTNQLQSMFQNLSSGQTKKRKMKIKDALKTLIDDEAAKLINPEDLK 3705 Query: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300 Q AIDAVEQ+GIVFIDEIDKICK+GE SG DVSREGVQRDLLPLVEG TVSTKHGMVKTD Sbjct: 3704 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTD 3525 Query: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMA 360 HILFIASGAFQ+A+PSDLIPELQGRLPIRVEL AL+ DFERILTEPNAS+T QYKALMA Sbjct: 3524 HILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMA 3345 Query: 361 TEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITI 420 TEGVNIEFT IK+IAEAA++VNE TENIGARRLHTV+ERLM++IS++ASD+ GQ + I Sbjct: 3344 TEGVNIEFTGESIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQGQVVRI 3165 Query: 421 DADYVSKHLDALVADEDLSRFIL 443 D YV L +V +EDLSRFIL Sbjct: 3164 DEAYVMDALGDVVENEDLSRFIL 3096 >embl|AE006234|AE006234 Pasteurella multocida subsp. multocida str. Pm70 section 201 of 204 of the complete genome. Length = 14505 Score = 121 bits (304), Expect = 7e-29 Identities = 107/426 (25%), Positives = 192/426 (45%), Gaps = 4/426 (0%) Frame = +1 Query: 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 TP EI + LD ++IGQD AK+ +++A+ N ++R++ ++++ E+ NIL+IGPTG GK Sbjct: 2380 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGK 2559 Query: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 T +A +A++ N PF +AT TE GYVG++V+++++ L VQ+ + + RA Sbjct: 2560 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKL---------VQSCDYDVERA 2712 Query: 124 EE--LAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAP 181 E+ + + I + T + + PS R + +++ L K IE +A+ P Sbjct: 2713 EQGIIYIDEIDKI-----------TRKSENPSITRDVSGEGVQQALL--KLIEGTVASIP 2853 Query: 182 MGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 GG+K +++ D K+L A Sbjct: 2854 -----------------------PQGGRKHPQQEMLRVDTSKILFICGGA---------- 2934 Query: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 +DK+ ++ G + G ++ + T+S V+ D Sbjct: 2935 -------------FAGLDKVIEKRVHVGSGI---GFSAEVKSKQDKATLSQLFEQVEPDD 3066 Query: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 ++ LIPE GRLP+ L L +ILTEP ++ QY+AL + Sbjct: 3067 LMKFG-----------LIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSL 3213 Query: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSG-QNITI 420 E V +EF+ + +A+ A GAR L +++E ++ + YD L + + + Sbjct: 3214 EDVALEFSPEALTAMAKKA-----LARKTGARGLRSIVEAILLDTMYDLPSLQHLEKVIV 3378 Query: 421 DADYVS 426 +A ++ Sbjct: 3379 EASTIT 3396 >embl|AE006080|AE006080 Pasteurella multocida subsp. multocida str. Pm70 section 47 of 204 of the complete genome. Length = 13546 Score = 47.0 bits (110), Expect = 2e-06 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Frame = +2 Query: 2 SEMTPREIVSELDKHIIGQDNAKRSVAIA---LRNRWRRMQLNEELRHEVTPKNILMIGP 58 + M +E + + G D AK V LR+ + +L ++ PK ILM+GP Sbjct: 1247 ARMMTQEQIKTTFADVAGCDEAKEEVGEIVDFLRDPGKFQKLGGKI-----PKGILMVGP 1411 Query: 59 TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 109 G GKT +A+ +A A PF + + F E+ +VG S +RD+ + A K Sbjct: 1412 PGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGA-SRVRDMFEQAKK 1558 >embl|AE006206|AE006206 Pasteurella multocida subsp. multocida str. Pm70 section 173 of 204 of the complete genome. Length = 12216 Score = 40.4 bits (93), Expect = 2e-04 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 14/98 (14%) Frame = +1 Query: 12 ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 71 EL K +IGQ A +V+ A+R R L++ R + L +GPTGVGKTE+ + LA Sbjct: 11230 ELHKRVIGQHEAIEAVSNAIRRS--RAGLSDPNR---PIGSFLFLGPTGVGKTELCKTLA 11394 Query: 72 KLA---NAPFIKVEATKFTE-----------VGYVGKE 95 ++++ ++F E GYVG E Sbjct: 11395 NFLFDDENAMVRIDMSEFMEKHSVSRLVGAPPGYVGYE 11508 Database: pm Posted date: Oct 7, 2007 10:56 PM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.315 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 204 Number of Hits to DB: 768,812 Number of extensions: 8158 Number of successful extensions: 69 Number of sequences better than 1.0e-03: 4 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 6 Length of query: 443 Length of database: 756,529 Length adjustment: 85 Effective length of query: 358 Effective length of database: 739,189 Effective search space: 264629662 Effective search space used: 264629662 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)