msbar abcdef.fasta ab.fasta -point 4 -count 252 -auto msbar ab.fasta a.fasta -point 4 -count 378 -auto msbar ab.fasta b.fasta -point 4 -count 378 -auto msbar abcdef.fasta cdef.fasta -point 4 -count 378 -auto msbar cdef.fasta f.fasta -point 4 -count 252 -auto msbar cdef.fasta cde.fasta -point 4 -count 63 -auto msbar cde.fasta e.fasta -point 4 -count 189 -auto msbar cde.fasta cd.fasta -point 4 -count 44 -auto msbar cd.fasta c.fasta -point 4 -count 145 -auto msbar cd.fasta d.fasta -point 4 -count 145 -auto